BAC Information

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BAC

Clone NameMSMg01-449O16
Chromosome14 (Build37)
Map Location 18,785,609 - 18,785,850
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449O16.T7 (MSMg01no449_o16.b1)MSMg01-449O16.TJ (MSMg01no449_o16.g1)
ACCAG537772AG537773
length751737
length of high quality
(start - end)
476 (54 - 529)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no449_o16.b1 PHD_FILE: MSMg01no449_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:40 2005CHROMAT_FILE: MSMg01no449_o16.g1 PHD_FILE: MSMg01no449_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGTTCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCGCGGAATTCTGCACTATTTCCTCAGGTTCTGGGCTTTTTATTGGTTG
GGAGACTTTTAATGACTGCCTCTATTTCTTTAGGGGTTAGGGGACAGTTT
AGATGGCTTATCTGGCCCTGATTTAACTTTGAACCTGGTAACTGTCTAGA
AAATTGTCCATTTCTTCCAGATTTTCTAGTTGTGCTGAGTATAGTCTTTT
GTACTAGTATCTAAATTTTTTTAAATGTCTTAGTTTCTGTTTTTTATGTC
TCCCTTTTCATTTCTGATTTTACTAATTTGGATACTGTCTCTGTGCTCTC
TGATTTGTCTGACTAAGGGTTTATCTATCTTGTTGATTTTCCCTAAAAAA
ACCAGCTCCTGGTTTTGTTGATTCTTTGTATAGTTCTTTTTGTTTCTACT
TGGTTGATTTCAGCCCTGAGTTTGATTATTTCCTCCTGTCCTCTCCTCTT
GGGTGTATTTGTTTCTTTTTGTTCTATACCTTTCAGGTGTGCTGATAATT
AAGCTTCTACTGTATGGTCACTCCAGTTTTCTTTTTGGAGGTCCCTCAAC
TATGGGTCCTTCTTCTTCTTCTTCTTCCTCTTCTTCATCCTCATCTTCTT
CCTCTACTTTCTTTCTGCTTCTTTCTCCTTCTTCTTTCTCTTTCCTTCCT
TCTCTTTCCTCCTTCATCCTCCTTCTTTTCTTATTCCTCCATCCTTGCAC
C
TTTTGTTCGATGAAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCTTGCCTTCCTGAGCT
CCTGGGCCTTTGGCTTGCCTGTCTAGCCTGTAGCTGTGTACATGAATGAA
TGCCCATCATCTGAGCAGAATCAAATCAAGCTCCATAGCTTCCCATGCCC
TCCCCTCTCTTCTGTAACTTGGAGGGAAACAGGAGACCTGAAAGATGCCG
GCAGTTGATGTGCCTGCTGGTGCTGACTACCTTCCCCTAGCCCCACACTC
CTTCCACCAAACCTAGCTTCCGTCATGTTCTTCCCCCTCAAGGAGCTAAG
TGGTGGCAGCCATCTTAATATCTAGAGCAGAAGATAAAAAGGAACCAGGA
AGAAAATGGAGTTCTTGCATTTCTATTGGAATCTTAAGAGGAAGCAAGCA
CATCGAGACCACATTTGTTCACATGTAGAACAAGCAGATGAACTGACAGA
AGGGTATGCGATAGTGATGTATGTGCTAAAATGCTCTGACTGTGGTGTGC
CCATCTCAAGAACAGATCTACTGCCTTATCCCTGATTATTTGGGCGCCTT
GTTCAACAAGTTTTTGAATCCAGTCTGTGCAGGCTGGACAATTCCTTGCC
ACCTGTTGCTGTCTCTCTTTTTGCTGGCACATGCCCAATTATCTTGCCTT
CCTTTCCAAACCTGGGTATTCCCCTATGTCGTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_o16.g1 MSMg01no449_o16.g1 CHROMAT_FILE:
MSMg01no449_o16.g1 PHD_FILE: MSMg01no449_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:40 2005
         (245 letters)



>mm_chr14_18785409_18786053
          Length = 645

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttcttgccttcctgagctcctgggcctttggcttgcctgtctagcctgtagctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttttcttgccttcctgagctcctgggcctttggcttgcctgtctagcctgtagctgtgt 383

                                                                       
Query: 61  acatgaatgaatgcccatcatctgagcagaatcaaatcaagctccatagcttcccatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acatgaatgaatgcccatcatctgagcagaatcaaatcaagctccatagcttcccatgcc 323

                                                                       
Query: 121 ctcccctctcttctgtaacttggagggaaacaggagacctgaaagatgccggcagttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctcccctctcttctgtaacttggagggaaacaggagacctgaaagatgccggcagttgat 263

                                                                       
Query: 181 gtgcctgctggtgctgactaccttcccctagccccacactccttccaccaaacctagctt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 262 gtgcctgctggtgctgactaccttcccctagccctacactccttccaccaaacctagctt 203

             
Query: 241 cc 242
           ||
Sbjct: 202 cc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)