BAC Information

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BAC

Clone NameMSMg01-450G15
Chromosome14 (Build37)
Map Location 93,375,383 - 93,375,865
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377, LOC638252
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450G15.T7 (MSMg01no450_g15.b1)MSMg01-450G15.TJ (MSMg01no450_g15.g1)
ACCAG538150AG538151
length766764
length of high quality
(start - end)
479 (70 - 548)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no450_g15.b1 PHD_FILE: MSMg01no450_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:20 2005CHROMAT_FILE: MSMg01no450_g15.g1 PHD_FILE: MSMg01no450_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCATTTCCCTGCCTACCTGAATGCTGCCATATTCCTACCTTG
AAGATAATGGATGAAGCCTCAGAGCCTGTAAGCCAGCCCCAATTAAAGGT
TGTCCTTATGAGAGTTGCCTTGTTCATGCCTTGGTCTTCACAGCAGTAAA
ACCCTAACTAAGACAGCCACACTTACTTCAACAAGACCACATCTCTTAAT
AGTGCCACTTTCTAAGGGCCAAGCATTCATATACATGATTCTCTGGGGAG
CATTCCTATTCAAACCACCATTATTTACTAAATATTATTCAAATGTATGT
AATCTAAATAGAAGAAAACCAACACTCATAACTTCTATTCAAATGATCTT
TTATTCTGATGGCAAATAAGCAGGTTTTTTCCAAAGTAAATCTCAGTTTC
TTTTTCTAGCCAAGACTTAGGACTCAAACAAATAAATTACACAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGATAG
AAAGATAGAAAGAGAGAGGAAGGAAGGATGGATAGAAGGAAAGAAGAGAG
AGAGAAAGAGAGAGAGAGAGAGAGATAGGGTAGGCCCTCTCCTCTTTCTC
TCTTTTTTTTTCTTTCCTATCTCCCCTTTTTTTCTTTTCTCTCTTTTTCC
TTACCTTACTCCTTACTTCTCTTCTCTCACTTCTCTATTTCTTTCTTCCC
TTCGCTTTTTTTTCCC
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAACACCTGAAAAAATGTTCAACTTCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACACTGAGATTCCACCTTATGCCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGAAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCATATTTTTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACGGGTAAGAAG
GACACATGCTCCACTGTGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAATCCAGATGTCCCTCAATAGAGGAATGGATACAGAAAATGT
GGCATATCTACTCAATGTACTACTACTCTCCTATTATACATAATGACTTT
ACGACTTTCCTACTCCAATGGACGTACCTGGAGGGCTCCATCTCTGAGTG
AGTCAACTCTTTTTCCTAGTAACTCCTCACACATTGTTCTCCTTGACACG
TTGCATATATTCCTCCTCCTTAGCCTATCTCACCATCTCCTATTTCTTTT
CGCTTCATCTCGGTACTTTCCTTATTCACGTCCCATTGTTCTTTTCCCTT
TCTTTCTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_g15.b1 MSMg01no450_g15.b1 CHROMAT_FILE:
MSMg01no450_g15.b1 PHD_FILE: MSMg01no450_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:20 2005
         (479 letters)



>mm_chr14_93374987_93375865
          Length = 879

 Score =  746 bits (386), Expect = 0.0
 Identities = 458/486 (94%), Gaps = 11/486 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctacctgaatgctgccatattcctaccttgaagataatggatgaagcctcagagcctgt 60
           |||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct: 879 cctacctgaatgctgccatattactgccttgaagataatggattaagcctcagagcctgt 820

                                                                       
Query: 61  aagccagccccaattaaaggttgtccttatgagagttgccttgttcat-gccttggtctt 119
           |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||
Sbjct: 819 aagccagccccaattaaaggttgtccttatgagagttgccttggacatggccttggtctt 760

                                                                       
Query: 120 cacagcagtaaaacccta-actaagacagccacacttacttcaacaagaccacatctctt 178
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cacagcagtaaaaccctagagtaagacagccacacttacttcaacaagaccacatctctt 700

                                                                       
Query: 179 aatagtgccactttctaagggccaagcattcatatacatgattctctggggagcattcct 238
           ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 699 aatagtgccactttctaggggccaagcattcatatacatgattctccggggaacattcct 640

                                                                       
Query: 239 attcaaaccac--cattatttactaaatattattcaaatgtatgtaatctaaatagaaga 296
           |||||| ||||  |   | ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 639 attcaagccactac---acttactaaatgttattcaaatgtatgtaatctaaatagaaga 583

                                                                       
Query: 297 aaaccaacactcataacttctattcaaatgatcttttattctgatggcaaataagcaggt 356
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 582 aaaccaacactcataacttctattcaaatgatcttttattctgattgcaaataagcagat 523

                                                                       
Query: 357 tttttccaaagtaaatctcagtttctttttctagccaagacttaggactcaaacaaataa 416
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct: 522 tttttccaaagtaaatctcagtttctttttctaaccaagactcaggactcaaataaataa 463

                                                                       
Query: 417 attacacagaaagaa----agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 472
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 attacacagaaagaaagggagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 403

                 
Query: 473 gaaaga 478
           ||||||
Sbjct: 402 gaaaga 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)