BAC Information

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BAC

Clone NameMSMg01-450P06
Chromosome14 (Build37)
Map Location 18,584,750 - 18,585,334
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450P06.T7 (MSMg01no450_p06.b1)MSMg01-450P06.TJ (MSMg01no450_p06.g1)
ACCAG538557AG538558
length821741
length of high quality
(start - end)
98 (69 - 166)582 (83 - 664)
definitionCHROMAT_FILE: MSMg01no450_p06.b1 PHD_FILE: MSMg01no450_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:02 2005CHROMAT_FILE: MSMg01no450_p06.g1 PHD_FILE: MSMg01no450_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTAAATTTGCCCCGCTAACGACTCCTATTTCAAACAACCGCGGAATC
TATGAGTGCTNCACCAAAGGAGGCAGCATTTGGGATGTATATAAATACAA
AATTAATAATAACAAATGAATAAATTCATTTAATTTTTTCAACTTTTTTG
TTTGTTTGTTTGTTTTGGGCTTTTTTGTTCTGTTTTGTTCCCCTCGCCCC
CTTGTTTCTACTATTTCACTCTATCCTACCTATTCCCTCTTTTCTCTTTT
TCCCTTCCTCTTCTCTATTTCCCCCCCCCCCTTTTCTCTTCCCCCTTCTC
CCACCCTCCCCTTCTTTTTTCTTTCCCCCTATCCCCCCCTTTTTTTCCCT
TCTTCCTTTCCTTTTTCTCCTTTCCTTCCTACTCATCCCTCTCTTACCCC
TCCTCATATTTATCCACATTTACTATCCCCCTTCCCTCATTCCCCCTTCT
TCCTTTCCCCTCCCCCCCCCTATATTCTCTCCCCTTCCTCCTCTTCTCTT
CCCCTCTTTTCCCTTTTCCCTCTCTCTTCCTCCCCTTCCTTCTTCTTTCC
CCCCTTCCTCTCCTCCCCCCTTTTCCTCTTTCCACCACTACTTCCCCCAC
CATTCTTCCTTCCTTTTTCCTCCCCCTCCCCTCTTTTTTTCTCCTTCCTC
CTTCTCCCCCCCCCCCCCTCTCTCTTTTTTTTCCCCCCTCTTTCTTTACT
CCCCCTCTTCCTCCCATCCTCCTCTCCCCTTTTTCTTTTCCCCTTCCCCC
CCTTTCCCCTTCCCTCCTCACCCTTACTCCACCTTTTTACCTCTTTCTCC
ACTCTTTCTCCCTCTCCACTT
NNGGGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGGAAGGCATTCTTA
AGGATCTTTCTCCACACCCACTTCCTATCTTGATTCTCTTTGCCTCCTTC
TCCCAATCTCCTGCCAAAGCCTAGAGACACTGACCCAAGCAATGTGAAGA
TACACTCCACTGGGAGGATTAAAGGCCTTTGCAGGATTTATAAAAATAGC
TGCAGCAATGACCAGCACTCAACAAGCAGGCATCTGTCCTGTGGTGACCA
CTGAGGGCAACTGCATCCTTGCCACTCTGTGGCCAAGAGTGATGATATGG
TTGAATCAATAGGGACTTGGGAAGGCTTCCTCAAATAAAAGATAACCAGG
GGCAGCTGGAAAGTTTCCTTACAGGTGTGGCCTGCAGGTAGGTGACAATC
TCACCACTGATGGATGATCTGGTAGGAAGGAAGCAGAGATACTGTCCCAA
GGCTACACTTGCATGGCAAACTCAGTGATGTCTCCACTCAGTGATGTCTC
CAGGGATCGTTGGAATCGAAGTCCACATGATAGCCCTAAAAGCAGCACCT
TTTTCTGGGACATCACGGGAAGGAAGATGGACAAAGCAATAACTCACTGG
TAACTACTCTGTGTCTGAGCAGAATGCGTCATAGTTCATTATCACCAGTA
TCAGGGCCATCAAGAGGAAGGAGGCCCCTCAGCCCCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_p06.g1 MSMg01no450_p06.g1 CHROMAT_FILE:
MSMg01no450_p06.g1 PHD_FILE: MSMg01no450_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:02 2005
         (582 letters)



>mm_chr14_18584549_18585534
          Length = 986

 Score = 1112 bits (575), Expect = 0.0
 Identities = 581/585 (99%), Gaps = 4/585 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   agaggaaggcattcttaaggatctttctccacacccacttcctatcttgattctctttgc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agaggaaggcattcttaaggatctttctccacacccacttcctatcttgattctctttgc 727

                                                                       
Query: 62  ctccttctcccaatctcctgccaaagcctagagacactgacccaagcaatgtgaagatac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctccttctcccaatctcctgccaaagcctagagacactgacccaagcaatgtgaagatac 667

                                                                       
Query: 122 actccactgggaggattaaaggcctttgcaggatttataaaaatagctgcagcaatgacc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 actccactgggaggattaaaggcctttgcaggatttataaaaatagctgcagcaatgacc 607

                                                                       
Query: 182 agcactcaacaagcaggcatctgtcctgtggtgaccactgagggcaactgcatccttgcc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agcactcaacaagcaggcatctgtcctgtggtgaccactgagggcaactgcatccttgcc 547

                                                                       
Query: 242 ac----tctgtggccaagagtgatgatatggttgaatcaatagggacttgggaaggcttc 297
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 actctgtctgtggccaagagtgatgatatggttgaatcaatagggacttgggaaggcttc 487

                                                                       
Query: 298 ctcaaataaaagataaccaggggcagctggaaagtttccttacaggtgtggcctgcaggt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctcaaataaaagataaccaggggcagctggaaagtttccttacaggtgtggcctgcaggt 427

                                                                       
Query: 358 aggtgacaatctcaccactgatggatgatctggtaggaaggaagcagagatactgtccca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aggtgacaatctcaccactgatggatgatctggtaggaaggaagcagagatactgtccca 367

                                                                       
Query: 418 aggctacacttgcatggcaaactcagtgatgtctccactcagtgatgtctccagggatcg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aggctacacttgcatggcaaactcagtgatgtctccactcagtgatgtctccagggatcg 307

                                                                       
Query: 478 ttggaatcgaagtccacatgatagccctaaaagcagcacctttttctgggacatcacggg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttggaatcgaagtccacatgatagccctaaaagcagcacctttttctgggacatcacggg 247

                                                        
Query: 538 aaggaagatggacaaagcaataactcactggtaactactctgtgt 582
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaggaagatggacaaagcaataactcactggtaactactctgtgt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 986
Length adjustment: 10
Effective length of query: 572
Effective length of database: 976
Effective search space:   558272
Effective search space used:   558272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)