BAC Information

Click to search

BAC

Clone NameMSMg01-451E16
Chromosome14 (Build37)
Map Location 36,116,645 - 36,117,218
singlet/doubletsinglet
Overlap geneGrid1
Upstream gene3110001K24Rik, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451E16.T7 (MSMg01no451_e16.b1)MSMg01-451E16.TJ (MSMg01no451_e16.g1)
ACCAG538817AG538818
length767782
length of high quality
(start - end)
688 (76 - 763)575 (75 - 649)
definitionCHROMAT_FILE: MSMg01no451_e16.b1 PHD_FILE: MSMg01no451_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:29 2005CHROMAT_FILE: MSMg01no451_e16.g1 PHD_FILE: MSMg01no451_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXNATTCAGAGGAGGGGCGGA
ATTCCATGATTTCCTTTTTCTAACAGTTGAGTTATATCCCATTGTGTAAA
TGCACCATATTTTTTTAATTCATTTTTCTGTTAAGGGACATCCTACATGT
GGTATAGGATTGGAGTTGGGAACAAGAGTATGAATTCATTGTTGCTTTAA
TAACAGCATAAATGAGTGTATTTAGAAATTATAGGTATATTTTGTGAGTC
ATTATTAGACCCACAGACACTCCCTAGCTCTAATTTCTAAGAAAGATCAA
TACTAGTACTTATACCTGAGTAACAGCAAGCACAGCCAGTACCTGTGTCT
TCTCATCTAGTACCATGTGTAAAGATAGATAAAAGCTCCTTGGTGAAATC
ACTGATATTAAGCTGGGGGCAAAGAACAAAGATCTCACAGTGCCAGAAAG
CAAGGAAATGCAGGAAGAATAAAGAGAATAAAAAAACATTGGAGCCAAGC
AAAGGAGCTCTCAATAGCCAAAGCCAAAAGACTGTGAATGAAGAAACCAA
AGTGCAGCTTCTTACTTTGAAGAATAAAATATTCGTCAGTCTATATGAAT
GTAAATTAACAAAAAATGATAATGATCCTTAAAGAAGAATTCTAGATAAA
TCACATAGACCTTACTACCTCTGTGAAGTGGAAGCTCTCAGTTCTCTAGG
ANAACAGAACATAATGACTCATTATAAAAAATTAGGGTATAACAAATAGG
ACAAAGTAATTACATGG
CCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTAAGCAGAGTGTCATAGGTTGTCC
TGCTAGAAGGGTAGAGGCTCAGAATGTGGAAAGAAATGCAGACAATGGAG
ACCCAGCTCCAGGCTTGAGGGGAGAAAAGAAAGACTCTCAGAAACTATAC
TTGAGGCTGTTCATGTTACATTATGGCAAAGAACCACAAAATGATACCTG
ATACCACAGAGAATCAAGATGCTGGATATGTACCTGAAACATGTATTGTT
TTCCTTGTTGGATTTGGTCGGCCCTTGACTTGAACTTTCTTTGCTACACT
CTCTTTTTGAATGAGAATATAGGCTATCTGACACTGTATATCGGAATTAT
GTAACTTTTAATTTTATGGTTTGTGTTAGGTCTCAGAAGGGACTTTGGGC
TTTTGAACACTGTTGAAACTGTTAGTTGGATTTATCATCAGCAACTTCCT
TGAAAGGGCATTTACAATGATGTACCTTGGATGAAGAAAAAAGAAAGATG
TCAGATTTAAGGCCAGAAGTCCAGAAAAGATAGTGGAACTGATACATACA
TATGTATTGGTTGTGTAGACACTATAGGAGAACTTTTGTAAAATGGCAGA
GATCATGCACACTGGAAGGCCATAGAGGAAGAGAGAATTAAACACTGGAC
GTTGTTGACACCTTAGCTAAGCTTCTGCTAACTGGGAATAAGCNCCCAAG
AAGAAAGAAAATATCGAATATCTTCCACTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_e16.g1 MSMg01no451_e16.g1 CHROMAT_FILE:
MSMg01no451_e16.g1 PHD_FILE: MSMg01no451_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:29 2005
         (575 letters)



>mm_chr14_36116450_36117424
          Length = 975

 Score = 1002 bits (518), Expect = 0.0
 Identities = 558/576 (96%), Gaps = 9/576 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaagcagagtgtcataggttgtcctgctagaagggtagaggctcagaatgtggaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 196 tgtaagcagagtgtcataggttgtcctgctagaagggtagaggctcagaatatggaaaga 255

                                                                       
Query: 61  aatgcagacaatggagacccagctccaggcttgaggggagaaaagaaagactctcagaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 256 aatgcagacaatggagacccagctccaggcttgaggggagaaaagaaagactc--agaaa 313

                                                                       
Query: 121 ctatacttgaggctgttcatgttacattatggcaaagaaccacaaaatgatacctgatac 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 314 ctatacttgaggctgttcatgttacattatggcaaagagccacaaaatgatacccgatac 373

                                                                       
Query: 181 cacagagaatcaagatgctggatatgtacctgaaacatgtattgttttccttgttggatt 240
           ||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 374 cacagagaatccagatgctggacatgtacctgaagcatatattgttttccttgttggatt 433

                                                                       
Query: 241 tggtcggcccttgacttgaactttctttgctacactctctttttgaatgagaatataggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 434 tggtcggcccttgacttgaactttctttgctacactctctttttgaatgagaacataggc 493

                                                                       
Query: 301 tatctgacactgtatatcggaattatgtaacttttaattttatggtttgtgttaggtctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tatctgacactgtatatcggaattatgtaacttttaattttatggtttgtgttaggtctc 553

                                                                       
Query: 361 agaagggactttgggcttt-------tgaacactgttgaaactgttagttggatttatca 413
           |||||||||||||||||||       ||||||||||||||||||||||||||||||||||
Sbjct: 554 agaagggactttgggctttgggcttttgaacactgttgaaactgttagttggatttatca 613

                                                                       
Query: 414 tcagcaacttccttgaaagggcatttacaatgatgtaccttggatgaagaaaaaagaaag 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcagcaacttccttgaaagggcatttacaatgatgtaccttggatgaagaaaaaagaaag 673

                                                                       
Query: 474 atgtcagatttaaggccagaagtccagaaaagatagtggaactgatacatacatatgtat 533
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atgtcagatttaaggctagaagtccagaaaagatagtggaactgatacatacatatgtat 733

                                               
Query: 534 tggttgtgtagacactataggagaacttttgtaaaa 569
           ||||||||||||||||||||||||||||||||||||
Sbjct: 734 tggttgtgtagacactataggagaacttttgtaaaa 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)