BAC Information

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BAC

Clone NameMSMg01-451F05
Chromosome14 (Build37)
Map Location 12,505,132 - 12,505,655
singlet/doubletsinglet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451F05.T7 (MSMg01no451_f05.b1)MSMg01-451F05.TJ (MSMg01no451_f05.g1)
ACCAG538843AG538844
length953740
length of high quality
(start - end)
---541 (83 - 623)
definitionCHROMAT_FILE: MSMg01no451_f05.b1 PHD_FILE: MSMg01no451_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:32 2005CHROMAT_FILE: MSMg01no451_f05.g1 PHD_FILE: MSMg01no451_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCATCCTCCCTATCTTTCGAGTACGCCCACCCTCTCCACCCACCACC
TACACAAANCTACATCCCCGCCGCTCTATCTCACCCTAAAAATAGAAAGA
GAGGCTCGTGTTGTCTTTGTATTTTCTTTTATTGTCGCGGAGACACCTCT
GAGACCTTTCTATCCATTTTCATTCCCTCCCTTATTACTCATCTACATAT
TCTCTCTCCCAGCACCACCCCAACCCCGCCCCACCCTATTTTTCGCCACT
ATCTCTCATATACCCGTACCCTTCTCTTACTCATCCCCTTCTCATACATA
ATCCTACCACTCTCCCCCCGCTTTAGAAACCATAATACTATTTAGTTATT
ATTCCATTTTCTTCTCATTCCTCTCCATCCATAACCTTAGCTCCACCTTT
CTCCCTTGCCTCACCTTTCCTTCCCATATTCATCCTTTCCCAACTTTCCT
TTACTTTCCCCCTCACTTATTTCTTTACTTCACCCTTAGCCTCTCTCCCT
CCTATATCTTCTTTTAACACCCTTTCCTCTTTATATTTACGCTCCTTTTT
ATTTCCCTTCTCCACTAATACCCACTACTACTATGCCATTTTCAATCCTT
TATCTCTCCTTTTTTCGCGCCTCTAATTAATTTAATATAACACTCATCCC
AAATTTCATTAATATACTTATAGCTATCTACAACACCTACCTACCACAAA
TTAAACACCCACACTCATCCTTAACCAACTAAATACATTAATTCTATGGC
ATACCTCCCTCTTCCACAACACACACNCCTCAAACCAAAACCATATATAC
ATATATAAACCTCCTGCACACTCTTATATATTCACCATACATTACTACCA
CAACCGTTAACTCTCTCTATATATCATTATCCCTCGCGAACGAATATATT
ACCCATATTCCCATCGTTCGTATCTGTCCGCCAATTTCATCACACTCCCA
CAG
NTTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATACAGCTGCTCAAGT
GTCAGAGATAAATACGGATCTTGGAGCCAGAATTCCAGATATGTGTTTCC
CTTGGTGCTCCTTTGTGGGCCCAGGTGCAACAGTAGCTTGGAGAAGCCAA
GTGTTTGTTTTGACACTTAGGGAATCACCACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACATCAT
ACAAACCAGTGAGAGTATGCCTGTCTCTATATTTGAAAGTAGTTAAGCAG
AGAAATTGTGGTGTGCCGCTTAGCTTCTCTTCAGACTTGAAACCTTGGGG
AGTGCCTGCTTGCATTCTGACAGTGTTCTGGCTACGTAGCCATCAAATAA
TAGCCTTCTCAAGTGCACAGGGATGAAAACCTTTGGCAGGAACAGCAAGC
AGGGGCTCACCTTCTGCCCAGTGCCCTTGTCATTTCTGCATCCTCCGCTG
ATTTCATCTTCTCTTCCTCTGGGCTCTGCCCACGTCTTCCCTGGATTAGG
TGAGCAGTGGAGCTTTGCCAGACCCCATGCTGGCATTAGTTCCAGCAAGG
CAGTGGCCTTCCCCTGTTGTGACAATGTCACTGACTCTCATTTTAAGCAG
CAGATGGCTTAGAACACATGGACAGTGCTTCCTGTGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_f05.g1 MSMg01no451_f05.g1 CHROMAT_FILE:
MSMg01no451_f05.g1 PHD_FILE: MSMg01no451_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:32 2005
         (541 letters)



>mm_chr14_12504932_12505873
          Length = 942

 Score =  913 bits (472), Expect = 0.0
 Identities = 517/542 (95%), Gaps = 19/542 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatacagctgctcaagtgtcagagataaatacggatcttggagccagaattccagatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agatacagctgctcaagtgtcagagataaatacggatcttggagccagaatttcagatat 260

                                                                       
Query: 61  gtgtttcccttggtgctcctttgtg-ggcccaggtgcaacagtagcttggagaagccaag 119
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 261 gtgtttcccttggtgctcctttgtgcggcccaggtgcagcagtagcttggagaagccaag 320

                                                                       
Query: 120 tgtttgttttgacacttagggaatcaccacacacacacacacacacacacacacacacac 179
           ||||||||||||||||||||||||||||||||||||||||||||               |
Sbjct: 321 tgtttgttttgacacttagggaatcaccacacacacacacacac---------------c 365

                                                                       
Query: 180 acacacacacacacacacacacacacacacacacatcatacaaaccagtgagagtatgcc 239
            ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||
Sbjct: 366 -cacacacacacacacacacacacacacccacac--catacaaaccagtgagagtatgcc 422

                                                                       
Query: 240 tgtctctatatttgaaagtagttaagcagagaaattgtggtgtgccgcttagcttctctt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtctctatatttgaaagtagttaagcagagaaattgtggtgtgccgcttagcttctctt 482

                                                                       
Query: 300 cagacttgaaaccttggggagtgcctgcttgcattctgacagtgttctggctacgtagcc 359
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 483 cagacttgaaaccttggggagtgtctgcttgcattctgacagtgttctggctacgtagcc 542

                                                                       
Query: 360 atcaaataatagccttctcaagtgcacagggatgaaaacctttggcaggaacagcaagca 419
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 543 atcaaataatagccttctcaagtgcacagggatgaaagcctttggcaggaacagcaagca 602

                                                                       
Query: 420 ggggctcaccttctgcccagtgcccttgtcatttctgcatcctccgctgatttcatcttc 479
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ggggcccaccttctgcccagtgcccttgtcatttctgcatcctccgctgatttcatcttc 662

                                                                       
Query: 480 tcttcctctgggctctgcccacgtcttccctggattaggtgagcagtggagctttgccag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcttcctctgggctctgcccacgtcttccctggattaggtgagcagtggagctttgccag 722

             
Query: 540 ac 541
           ||
Sbjct: 723 ac 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space:   494892
Effective search space used:   494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)