BAC Information

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BAC

Clone NameMSMg01-451G05
Chromosome14 (Build37)
Map Location 76,521,630 - 76,522,233
singlet/doubletsinglet
Overlap geneNufip1
Upstream gene4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik
Downstream geneLOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451G05.T7 (MSMg01no451_g05.b1)MSMg01-451G05.TJ (MSMg01no451_g05.g1)
ACCAG538889AG538890
length733736
length of high quality
(start - end)
277 (77 - 353)603 (79 - 681)
definitionCHROMAT_FILE: MSMg01no451_g05.b1 PHD_FILE: MSMg01no451_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:37 2005CHROMAT_FILE: MSMg01no451_g05.g1 PHD_FILE: MSMg01no451_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGTCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCGAAAAGG
ATCCGCGGAATTCAGTGTTACCTAAAAGGCAAAAAATCCATACAATTTTT
AGTATACAAAGGTATTTGCTTTTATTACATGTTTTTATTGCTGGAAATAT
TTCTCAGTAAAAAATATTTATTTTTATTTTCGTGCAGGTGTGTGCACCTG
CTTGTCTCTGTGAGTACATGTGTGCATGTGCCCTCAGAGGCTAGAAGAAG
CCGTTGGATCTCTTTGAATGGAGTTACAGGCAGTTATGGGCGCTTGCTGT
ACCTGCTGGGAACTTAACCTGGGTCCTCTGCAAGAACAGCACGTACTGTT
AACCACTGAGCCACTTCTCCAGCCCACTATTCTTTTTTTTTTTCTTTAAA
TACACAATGTTTACCATTTAGCACCTTTATGCTTACAAAGATTTTGTGAG
GACAATACACCTTCTTACTTAGTTCCCTGGTTCTGTCTCCTCACATTTCT
ATATTCTGTTATCTAACACGAGAATCTGATATCGGTATAGTCGCGCTACC
TAAACTCCAGCCGCTATGACGTTTCCTCCACTAATGCTCTGTTTATGTTC
CTATTCCATGCTCTGCCTGCATTTATGTATCTTGACCCCTTTATCCCCTC
TGGATTTTGAAGGGCTTTCATAATCTCTTTGTCTTTGATGGCCCTGTTAT
ATTTTAAGGGGTACCTTAGTTCTTATTTTCGAA
TTAGTCGATGATATGGGAGGCCTGGCGGCCGCCTGGTCAAAAAAGGGGGG
TGAACTATAGAAGTTCTCAAAAAAGTCCCATTGGTACAACAAAATGCTTT
TTAATTTGAAGGTTACTGTTCTAGTGAAAGGTGCTCTTCTGGAGGAAGCC
AGTGTGTGTTTTGGCACAATAGAGTGCTAACATCTGTGTAGCCATTCTGC
TAGAAAAGTGAAAGAGACCCTGGACTATGGATTTAAATCCAGAAAAAAAA
AGTTACATCTTTATGTTATCTTTCAGACTAACCAAAGTTGGAGGGCCCAC
TGTGCTTACAAAGTAGGAGATCCTGTCTCCCAGGGCAATGTCCACTAGGT
GGAGCTTTTCTCTTCCCATCGTTGCCCCTGTCTGCTGTTCCCAGCTCAGG
CTGAGTTCCCTGTCTACCTCTTATTAATGGGTGTATGTTTCTGACGTTCA
GAAAGACTTTGAAATTAAACTACAGTGGCATAAGCTTGTGTTCGAGCGGT
TTTTAATAAAGAGAGAGAGAGGAGCTGTGCTCTGTCTGGGATAGGCCTAG
GAGAAACAGTAAGAGTAGCAGCAGTTTGAGTGCAAGGAAAGCGTTGGCTT
ACTGTGCAGAGTAGCAGTTTCACCCATCAGTGGACTCCATCCTGTAAAGA
CATCAGTAGGACGCTGAACTCCCTTTGCATGGAGGGCATTGAGTAGCCCT
GAACTTGGTGCTGAGCCACCACAGGGCCTGTGGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_g05.g1 MSMg01no451_g05.g1 CHROMAT_FILE:
MSMg01no451_g05.g1 PHD_FILE: MSMg01no451_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:37 2005
         (603 letters)



>mm_chr14_76521430_76522433
          Length = 1004

 Score = 1096 bits (567), Expect = 0.0
 Identities = 596/607 (98%), Gaps = 7/607 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattggtacaacaaaatgctttttaatttgaaggttactgttctagtgaaaggtgctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattggtacaacaaaatgctttttaatttgaaggttactgttctagtgaaaggtgctctt 260

                                                                       
Query: 61  ctggaggaagccagtgtgtgttttggcacaatagagtgctaacatctgtgtagccattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggaggaagccagtgtgtgttttggcacaatagagtgctaacatctgtgtagccattct 320

                                                                       
Query: 121 gctagaaaagtgaaagagaccctggactatggatttaaatccagaaaaaaaaagttacat 180
           ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct: 321 gctagaaaagtgaaagagaccctggactatggatttaaagccaggaaaaaaa-gttacat 379

                                                                       
Query: 181 ctttatgttatctttcagactaaccaaagttggagggcccactgtgcttacaaagtagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttatgttatctttcagactaaccaaagttggagggcccactgtgcttacaaagtagga 439

                                                                       
Query: 241 gatcctgtctcccagggcaatgtccactaggtggagcttttctcttcccatcgttgcccc 300
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagcctgtctcccagg-caatgtccactaggtggagcttttctcttcccatcgttgcccc 498

                                                                       
Query: 301 tgtctgctgttcccagctcaggctgagttccctgtctacctcttattaatgggtgtatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtctgctgttcccagctcaggctgagttccctgtctacctcttattaatgggtgtatgt 558

                                                                       
Query: 361 ttctgacgttcagaaagactttgaaattaaactacagtggcataagcttgtgttcgagcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttctgacgttcagaaagactttgaaattaaactacagtggcataagcttgtgttcgagcg 618

                                                                       
Query: 421 gtttttaataaagagagagagaggagctgtgctctgtctgggataggcctaggagaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtttttaataaagagagagagaggagctgtgctctgtctgggataggcctaggagaaaca 678

                                                                       
Query: 481 gtaagagtagcagcagtttgagtgcaaggaaagcgttggcttactgtgcagagtagcagt 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 gtaagagtagcagcagtttgagtgcaaggaaagcattggcttactgtgcagagtagcagt 738

                                                                       
Query: 541 ttcacccatc-agtggactccatcctgtaaagacatcagtaggacgctgaact---ccct 596
           |||||||| | ||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 739 ttcaccca-ctagtggactccatcctgtaaagacatcagtaggacgctgaactgccccct 797

                  
Query: 597 ttgcatg 603
           |||||||
Sbjct: 798 ttgcatg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space:   589442
Effective search space used:   589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)