BAC Information

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BAC

Clone NameMSMg01-451I09
Chromosome14 (Build37)
Map Location 13,917,621 - 13,918,274
singlet/doubletsinglet
Overlap genenone
Upstream genePtprg, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
Downstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451I09.T7 (MSMg01no451_i09.b1)MSMg01-451I09.TJ (MSMg01no451_i09.g1)
ACCAG538992AG538993
length752746
length of high quality
(start - end)
335 (81 - 415)665 (80 - 744)
definitionCHROMAT_FILE: MSMg01no451_i09.b1 PHD_FILE: MSMg01no451_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:48 2005CHROMAT_FILE: MSMg01no451_i09.g1 PHD_FILE: MSMg01no451_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAAGGAGC
CGCGGAATTCTAAGCCTACCGTAAGATCAAGGACTATCTATGTCATTGGT
GAAGGCCAGGAAGCAAAGCTCGATTTTACTTAGGTATTTGGCAAGTTGTG
GGGAGCCGCCCTCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGT
TCTAAATGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTTCTCCAC
TCCATGTGCTCTGCCTTCCCCGTGACGACAACTCGGCCAATGGGCTGCAG
CCAATCAGGGAGCGACACGTCCTATGCGGAGGATAATTCTCCTTAAAAGG
GACGGGGTTTTGCCATTTTCTCTCTTGCTCCTGAAGATGTAAGCAATAAA
GCTTTTGCCGCAGAAGATTCCGGTTTGATTCGTCTTTCTTGCCGGTGGAA
CAAAAGCACCCGGTATAACTAGTCAATTGCTTGGAGGCCCCCTATATCAC
AACTCTACTTGTTTGAAAGCCCACCTACCCCTTTTTTCATGACAAGTTTT
GAAGACTTTTTTTTATCTTTACGTTCCCTCCCCCGTTAAATAAAGTTTTC
CCAGGAAAATCTTTTTGCCTTCTGAAACTGCGTTCCCAAGATTTCTTAAA
TTCTTTTCTCCCCTGTTGTTCCTCCTCCCTGGGGGTTGGCGTTGGTTTTT
CCCTCCCTATTTTTGTAAAGATGGTGTCCCTTCCTTTCCCCTCATACTAC
CN
TTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGAAAGAAAGTGGGAATA
TGAATGAATGTTGTAAAACTAGACTCTGTTTCACAGGTGTGTAAGGACAT
GAAGAAATACACAGAGTAAACACCAAAGAACCATCTTGCCAATGATTTAT
TCTTCTTATCCCAAAACAATGGCAGTGGTTATTAAGACAGTAAGCCATCC
TTGTTACTTCTTAAACTATGTTTATTTGAAATTCCTGACTATCCTTAGAT
TGCCTCTCTGCTCATGACTATTCTCTCAAACCATGTGTCATAGGGTCTAA
CTGTAAGGCAGTGAAGGATAGGTGGCCTCTGGTGTTGTAATTTTTTCAAA
GGCAGAAAGTTAGATGTGGTATTGGCATCAGCTATCACTGTTAGTGAATG
GTTGAGGTGCTTAGATTGACTTCCATTTAAATAAGAATACAAAACATCAA
GTAAATATAAATTTAGAACTAAAAGATCCTTTGGGAAAATTTGCAGACTT
ATATCTATAAATATGTATGAAGAGTTTCTTTGAGTTATCTGGAATTATTC
TAAACTACAAAGACAAAGCCTTGTTTTTTTGTTTTGTTTTTTTCTTCTTA
AGGACCCCCTGAGTGGTTGGGTGGAGGTACAGTGCATTTCATTCACTCCC
AAAGCATGAGATGCCTGTGTTCTGATTTGAATGAAAATGTCCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_i09.g1 MSMg01no451_i09.g1 CHROMAT_FILE:
MSMg01no451_i09.g1 PHD_FILE: MSMg01no451_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:48 2005
         (665 letters)



>mm_chr14_13917419_13918474
          Length = 1056

 Score = 1094 bits (566), Expect = 0.0
 Identities = 637/664 (95%), Gaps = 11/664 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtgaaa-gaaagtgggaatatgaatgaatgttgtaaaactagactctgtttcacaggtgt 61
           |||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 gtgaaaggaaa-tggaaatatgaatgaatgttgtaaaactagactttgtttcacaggtgt 261

                                                                       
Query: 62  gtaaggacatgaagaaatacacagagtaaacaccaaagaaccatcttgccaatgatttat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtaaggacatgaagaaatacacagagtaaacaccaaagaaccatcttgccaatgatttat 321

                                                                       
Query: 122 tcttcttatcccaaaacaatggcagtggttattaagacagtaagccatccttgttacttc 181
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 322 tcttcttattccaaaacaatggcagtggttattaagacattaagccatccttgttacttc 381

                                                                       
Query: 182 ttaaactatgtttatttgaaattcctgactatccttagattgcctctctgctcatgacta 241
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttaagctatgtttatttgaaattcctgactatccttagattgcctctctgctcatgacta 441

                                                                       
Query: 242 ttctctcaaaccatgtgtcatagggtctaactgtaaggcagtgaaggataggtggcctct 301
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttctctcaaaccatgcatcatagggtctaactgtaaggcagtgaaggataggtggcctct 501

                                                                       
Query: 302 ggtgttgtaattttttcaaaggcagaaagttagatgtggtattggcatcagctatcactg 361
           ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggtattgttattttctcaaaggcagaaagttagatgtggtattggcatcagctatcactg 561

                                                                       
Query: 362 ttagtgaatggttgaggtgcttagattgacttccatttaaataagaatacaaaacatcaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 562 ttagtgaatggttgaggtgcttagattgacttccatttaaataagaacacaaaacatcaa 621

                                                                       
Query: 422 gtaaatataaatttagaactaaaagatcctttgggaaaatttgcagacttatatctataa 481
           ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |
Sbjct: 622 gtaaatataaatttagaactaaaa--tcctttgggaaaatttgcagacttatatctatga 679

                                                                       
Query: 482 atatgtatgaagagtttctttgagttatctggaattattctaaactacaaagacaaagcc 541
           |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 680 atatctatgaagagtttctttgagttatctggaattattctaaactataaagacaaagcc 739

                                                                       
Query: 542 ttgtttttttgttttgtttttttcttcttaaggaccccctgagtggttgggtggaggtac 601
           |||||     ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgtt-----gtttt-tattttt-ttcttaaggaccccctgagtggttgggtggaggtac 792

                                                                       
Query: 602 agtgcatttcattcactcccaaagcatgagatgcctgtgttctgatttgaatgaaaatgt 661
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 agtgcattttattcactcccaaagcatgagatgcctgtgttctgatttgaatgaaaatgt 852

               
Query: 662 ccaa 665
           ||||
Sbjct: 853 ccaa 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1056
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1046
Effective search space:   685130
Effective search space used:   685130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)