BAC Information

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BAC

Clone NameMSMg01-452A19
Chromosome14 (Build37)
Map Location 41,624,131 - 41,624,818
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
Downstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452A19.T7 (MSMg01no452_a19.b1)MSMg01-452A19.TJ (MSMg01no452_a19.g1)
ACCAG539395AG539396
length673761
length of high quality
(start - end)		114 (75 - 188)687 (75 - 761)
definitionCHROMAT_FILE: MSMg01no452_a19.b1 PHD_FILE: MSMg01no452_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:30 2005CHROMAT_FILE: MSMg01no452_a19.g1 PHD_FILE: MSMg01no452_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTGTTTTTTNNNNTTTTTTNNNNNCCCAATXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCTCTTCTGAG
CCCCATTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGT
TCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGGTAA
AGATCCTTTCCCAATCTGTTTGGNGGGTCTTTTTTTGTCTTAATTGACGG
GTGTCTTTTTGCCCTTGCAAAAAACTTTGGAAGTTTTCATTTAAGTTCCC
CATTTTGGTCAAATTTCCTTCGAATTTTTAACAGCCACAAAAGCCCTTTT
TGTTGTGTTTCCGGTTTTCAGGGGAAATTTTTTTCCCCCCGCTTTGTGGG
GCCCCCTTTTTTTTTTTCTAAGGGGGGGGGTTTTTTTCCCCCCCTTTTTT
TCCCCCCCAAAAAAAAATTTCCCGGGGGCCCCCCGGGGTTTTTTTTGGGG
GAAATTTTCCTTTTGTTCCCCCCCTTTTAAATATTTTTCGCCCCCTCTTT
CCAACGGGGGGGAAAAAAAAAATTTGGTGGGGGGTTATTAGAANNCTCTT
TATTTTTCTTTTCTTCTGGAGGAAAAAAACAACCCCCCCCTTTTTTTTGG
GGGCCCCCCCCCCCACCCTTTTG

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAAATAAAGGAATGGCCTCCTTTTC
TTCCCCCCTCTGAGCCTTACAAATATAATGAAAAATAGTCAGTCAGCTCC
AAGACTCAGCAGAAGGAAAATTTATAATCTATAACTAGAAAGAGAAGCTG
TAAAAAACAATATGCATCTTAATGGAAGATAAATTTCAGGGAATTAAAGG
GCAGATTGGGGTGCAGAGTTTTTGAAGATTCCTGCATGGCAGGTATTCTT
AGGGGCCATTTAAGGGTTCAGGAGTTAAAAAGAGGCTAGGGAGAGTAATT
CTTTAGAAGGATATGTGACAGTGATAGCCTGGGGCCTTGGGGGCTTTCAG
ACCATGGTCACTTAGACCTGTTGCTTTGTGCCTTTGATAGCACAGTACAG
AGTGGCAGAAAAAAAAATGTGGCAGAGGTGTATTTAACTCAGGGCAGCTA
GGAAACAGAGAGTGGAGAGTGTCCAGGAAACCCAGTAATTCCCTCAAAGG
CATACCTATCTTTGTTCCACTAGGTTCTTTCTCTTAAAGGGTTTGCCCTT
TTCCAGTAGTGTGCGGGCTAGGAACCAAGTCTTTAATTTGTAGGCCGCTG
GGGGAAATTTCCAAACCACAGTGCTTTCAAAGGATCCTAATGCTACAATT
TATGCTTCAAAGAAACCTAAGCAAATGCATTAAATTTTGTAATAGTCTCT
ACATATGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_a19.g1 MSMg01no452_a19.g1 CHROMAT_FILE:
MSMg01no452_a19.g1 PHD_FILE: MSMg01no452_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:30 2005
         (687 letters)



>mm_chr14_41623931_41625018
          Length = 1088

 Score = 1299 bits (672), Expect = 0.0
 Identities = 684/688 (99%), Gaps = 1/688 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaataaaggaatggcctccttttcttcccccctctgagccttacaaatataatgaaaa 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 888 tcaaataaaggaatggcctccttttcttcccccctctgagtcttacaaatataatgaaaa 829

                                                                       
Query: 61  atagtcagtcagctccaagactcagcagaaggaaaatttataatctataactagaaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 atagtcagtcagctccaagactcagcagaaggaaaatttataatctataactagaaagag 769

                                                                       
Query: 121 aagctgtaaaaaacaatatgcatcttaatggaagataaatttcagggaattaaagggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aagctgtaaaaaacaatatgcatcttaatggaagataaatttcagggaattaaagggcag 709

                                                                       
Query: 181 attggggtgcagagtttttgaagattcctgcatggcaggtattcttaggggccatttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 attggggtgcagagtttttgaagattcctgcatggcaggtattcttaggggccatttaag 649

                                                                       
Query: 241 ggttcaggagttaaaaagaggctagggagagtaattctttagaaggatatgtgacagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggttcaggagttaaaaagaggctagggagagtaattctttagaaggatatgtgacagtga 589

                                                                       
Query: 301 tagcctggggccttgggggctttcagaccatggtcacttagacctgttgctttgtgcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tagcctggggccttgggggctttcagaccatggtcacttagacctgttgctttgtgcctt 529

                                                                       
Query: 361 tgatagcacagtacagagtggcag-aaaaaaaaatgtggcagaggtgtatttaactcagg 419
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 528 tgatagcacagtacagagtggcagaaaaaaaaaatgtggcagaggcgtatttaactcagg 469

                                                                       
Query: 420 gcagctaggaaacagagagtggagagtgtccaggaaacccagtaattccctcaaaggcat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gcagctaggaaacagagagtggagagtgtccaggaaacccagtaattccctcaaaggcat 409

                                                                       
Query: 480 acctatctttgttccactaggttctttctcttaaagggtttgcccttttccagtagtgtg 539
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acctatcttcgttccactaggttctttctcttaaagggtttgcccttttccagtagtgtg 349

                                                                       
Query: 540 cgggctaggaaccaagtctttaatttgtaggccgctgggggaaatttccaaaccacagtg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cgggctaggaaccaagtctttaatttgtaggccgctgggggaaatttccaaaccacagtg 289

                                                                       
Query: 600 ctttcaaaggatcctaatgctacaatttatgcttcaaagaaacctaagcaaatgcattaa 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctttcaaaggatcctaatgctacaatttatgcttcaaagaaacctaagcaaatgcattaa 229

                                       
Query: 660 attttgtaatagtctctacatatgaatg 687
           ||||||||||||||||||||||||||||
Sbjct: 228 attttgtaatagtctctacatatgaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space:   729806
Effective search space used:   729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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