BAC Information

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BAC

Clone NameMSMg01-452F11
Chromosome14 (Build37)
Map Location 26,527,660 - 26,528,238
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669315, LOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif
Downstream gene2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F11.T7 (MSMg01no452_f11.b1)MSMg01-452F11.TJ (MSMg01no452_f11.g1)
ACCAG539616AG539617
length694734
length of high quality
(start - end)
106 (66 - 171)578 (76 - 653)
definitionCHROMAT_FILE: MSMg01no452_f11.b1 PHD_FILE: MSMg01no452_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:52 2005CHROMAT_FILE: MSMg01no452_f11.g1 PHD_FILE: MSMg01no452_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAATATTAATAAANNANTCCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGGAATTCTTTTTGCCTCTCCCTAGTGGGAGGA
TACAAAAGAGAGCCACGAACTGCCCAGGGCTCCACTGTCCAGAGGGGGTG
GGATGGGGGAGTTGACCTGGCCTTGCCAGGGATTGTCAACCATTTAAGGG
GAGAAATTTTAAACTTACCCTGACTGGAGGATCCCCCTTTATTTTGTAAA
AACTATTCACCTGGCCATCCCCAGGGCTTTGGGTTTTAAAAAAAAAAAAA
AAAAAAACTTTTTGAGAATTTTGGGGTTTTGGGGGTTTTGGGGGGTTTTT
AGAATTTGGGGGCCCGGCAACTTAATGTAATAGAGGCTGGTTCTCGCCGG
GATTCCGCGCGTTTCTTTTCCTCGCCTTCTAGAAAAAAGAAGCCCTTGCT
TTGGTGGATTATTTTTTCTCTTTCCCCTCCCGTTGGGGGGTGAGTGAAAT
AATATGCCCACCTCTTTTCGCTTTCTNTTCTCTATTTTGGCGTTGACTTA
CATTTTCGTTATTCCCCGTGACTTTTTTTATTTCTATTTACCTCCTACAC
TTCCGTGTTNAAGGTTTTTGTCTTTTTNNNTTTTGNNNCGAATTAACGTT
CCTCTTTCTTTTTTTTTTTTGGTTGCAAACCGCCTGGGATTTAC
TCTTTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCCCGCGGAATTCCGGGCTGCCTGGGAAGGAGCCC
TGAGTTCTGTGGGTTTTCCTGGAGCAACCCTGAGAGGTTGTAGAAAGGGG
CTTTTCGAGTCCCTCGGCCTCTTGGAACCTTAGCTTCCTCTAGGTGACTA
CTTCCTCTTACCCCCCGCCCCCACGAGTTACTTCAAGGAGCAAAAGAGAT
GATGTGTATGAAGTAGGAAGTCTGGTATCTGGCACACCTCACTCCCTGCC
CCTCTGCCACCCTGGACCCATTTGGCCCGGCTTCCCTTGGAGTTCACCTC
TGACCCAGGAGTGGGAACAGAGATGGAGAGGACAGCACACCCAACCTGTT
ACCAGAGAGTCACTGCCCTCCGTTTACCAGTCTCTCTTCAGAGCTCCCTA
CCCCCAAATACCAAGGCCATGAGTTGTCTAATTTGGGCCAGGACACTCCA
GTATCCAGTAGATGTGACCGTGACCGAAGTGACATCACAGAAAACAGGAT
TCCTTCAACTGTGGAGGAAACTTGTGGCTGTGCCTGGGCTCAGGGCCCAG
GGCTGGCTCTTGTCCCCATCTCAGATCTCCCTCTGCTGATGAGGGACTTA
AGGCCTGTGGGCCCACAGGAAGTTCATTTCCCTTATGCTCTGAAGCTCCA
TCACTCCTGTGAGAAAGCACTGGTCAAGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f11.g1 MSMg01no452_f11.g1 CHROMAT_FILE:
MSMg01no452_f11.g1 PHD_FILE: MSMg01no452_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:52 2005
         (578 letters)



>mm_chr14_26527460_26528438
          Length = 979

 Score = 1089 bits (563), Expect = 0.0
 Identities = 575/579 (99%), Gaps = 1/579 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccgggctgcctgggaaggagccctgagttctgtgggttttcctggagcaaccctgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccgggctgcctgggaaggagccctgagttctgtgggttttcctggagcaaccctgaga 260

                                                                       
Query: 61  ggttgtagaaaggggcttttcgagtccctcggcctcttggaaccttagcttcctctaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttgtagaaaggggcttttcgagtccctcggcctcttggaaccttagcttcctctaggt 320

                                                                       
Query: 121 gactacttcctcttaccccccg-cccccacgagttacttcaaggagcaaaagagatgatg 179
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactacttcctcttaccccccgacccccacgagttacttcaaggagcaaaagagatgatg 380

                                                                       
Query: 180 tgtatgaagtaggaagtctggtatctggcacacctcactccctgcccctctgccaccctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatgaagtaggaagtctggtatctggcacacctcactccctgcccctctgccaccctg 440

                                                                       
Query: 240 gacccatttggcccggcttcccttggagttcacctctgacccaggagtgggaacagagat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gacccatttggcccggcttcccttggagttcacctctgacccaggagtgggcacagagat 500

                                                                       
Query: 300 ggagaggacagcacacccaacctgttaccagagagtcactgccctccgtttaccagtctc 359
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 ggagaggacagcacacccaacctgttaccagagagtcactgccgtctgtttaccagtctc 560

                                                                       
Query: 360 tcttcagagctccctacccccaaataccaaggccatgagttgtctaatttgggccaggac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttcagagctccctacccccaaataccaaggccatgagttgtctaatttgggccaggac 620

                                                                       
Query: 420 actccagtatccagtagatgtgaccgtgaccgaagtgacatcacagaaaacaggattcct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actccagtatccagtagatgtgaccgtgaccgaagtgacatcacagaaaacaggattcct 680

                                                                       
Query: 480 tcaactgtggaggaaacttgtggctgtgcctgggctcagggcccagggctggctcttgtc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaactgtggaggaaacttgtggctgtgcctgggctcagggcccagggctggctcttgtc 740

                                                  
Query: 540 cccatctcagatctccctctgctgatgagggacttaagg 578
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccatctcagatctccctctgctgatgagggacttaagg 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)