BAC Information

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BAC

Clone NameMSMg01-453A14
Chromosome14 (Build37)
Map Location 37,060,154 - 37,060,779
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453A14.T7 (MSMg01no453_a14.b1)MSMg01-453A14.TJ (MSMg01no453_a14.g1)
ACCAG540146AG540147
length754755
length of high quality
(start - end)
708 (47 - 754)628 (76 - 703)
definitionCHROMAT_FILE: MSMg01no453_a14.b1 PHD_FILE: MSMg01no453_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:46 2005CHROMAT_FILE: MSMg01no453_a14.g1 PHD_FILE: MSMg01no453_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGTGTTATTTGATT
TTCTGGAGTCCACCTTTTTGAGTTCTTTATATATAATGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATATGTTGGTGGCCT
TTTTGTCTTATTGACAGTGTCTTTTTCCTTACAGAAGCTTTGCAATTTTA
TGAGTTCCCATTTCTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTGCCCATCTCTTCAAGGCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTT
AGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCTTC
TACCTGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCT
TTCTTCCACTGGGTGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATA
GGTGTATGGTTTCATTTCTGGGTATTCAATTCTATTCCATTGGTCTACTT
GTCTGTAGCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAC
TAAACCTTTAGGTCAGGCATGGTGATTCTACCAGAGTTTCTTTTATCCTT
GAGAAGAGTTTTTTGCTATCCTAGGTTTTTTTTTTGTTATTCCAGATGAA
TTTG
AACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTGCACTTGCGCATAAGGCTT
GTTTACTAGTTAGGTGCAGTGGCGCCATCTTATAATGGCGATTGCTCACG
GCATGGCTCTCCACACCTATCAAGCAAACAGAGTCTCTCATTTTCTAGAG
CTCTAGAGCTCACCCTAGGAAGTTGGGCTGGCCACAGGTGTTTGTCTCCT
CATCCCCAGCCCCTGTTATTATAAGTGTGGGCCAGCATGCCAGGCTTTTT
ATGAAGGATCTGAGAGCCCATACTTGCACAGCAAGGATTTTACGAACTCA
GCACTATTCTGAGCCCTTCTCCTGCTTCTAATTAATTGAGTGGACCATGT
ATAATTTGTAATATATTAATGTTTGCAGATATGTTTAGCCTTTCATTGAA
AACTTGGAGGGGGGGGGACAAATGTAGGCAAGCTTTAGGACTCCTGAAAA
AAACAAAACAAAACAAAACAAAAAAGTCATGCTGTTTGTTTCCTTTCATT
ATGTCTTTATTGGGAAAAGTACATGAGTTTGCTTTCAAAGATTATCTTCC
CTGACTCCTTATTGTTATGGGGGCAGTAACCCTCTCTTCCTAGCCCAAAT
CGTTGTCATTTAACAGTGCTATGTTTTTTCTTAAACGTCTTTGGAAATGA
GTCAGAGTTGAGAGGGCTCACTTGAAGAGCAGGTACACACATGAAACACT
GGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_a14.g1 MSMg01no453_a14.g1 CHROMAT_FILE:
MSMg01no453_a14.g1 PHD_FILE: MSMg01no453_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:46 2005
         (628 letters)



>mm_chr14_37059952_37060980
          Length = 1029

 Score = 1181 bits (611), Expect = 0.0
 Identities = 623/627 (99%), Gaps = 2/627 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tcttgcacttgcgcataaggcttgtttactagttaggtgcagtggcgccatcttataatg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tcttgcacttgcgcataaggcttgtttactagttaggtgcagtggcgccatcttataatg 262

                                                                       
Query: 63  gcgattgctcacggcatggctctccacacctatcaagcaaacagagtctctcattttcta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcgattgctcacggcatggctctccacacctatcaagcaaacagagtctctcattttcta 322

                                                                       
Query: 123 gagctctagagctcaccctaggaagttgggctggccacaggtgtttgtctcctcatcccc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagctctagagctcaccctaggaagttgggctggccacaggtgtttgtctcctcatcccc 382

                                                                       
Query: 183 agcccctgttattataagtgtgggccagcatgccaggctttttatgaaggatctgagagc 242
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agcccctgttattataagtctgggccagcatgccaggctttttatgaaggatctgagagc 442

                                                                       
Query: 243 ccatacttgcacagcaaggattttacgaactcagcactattctgagcccttctcctgctt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccatacttgcacagcaaggattttacgaactcagcactattctgagcccttctcctgctt 502

                                                                       
Query: 303 ctaattaattgagtggaccatgtataatttgtaatatattaatgtttgcagatatgttta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctaattaattgagtggaccatgtataatttgtaatatattaatgtttgcagatatgttta 562

                                                                       
Query: 363 gcctttcattgaaaacttggaggggggggg-acaaatgtaggcaagctttaggactcctg 421
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 563 gcctttcattgaaaacttggaggggggggggacaaatgtaggcaagctttaggactcctg 622

                                                                       
Query: 422 aaaaaaacaaaacaaaacaaaacaaaaaagtcatgctgtttgtttcctttcattatgtct 481
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaaaaa-caaaacaaaacaaaacaaaaaagtcatgctgtttgtttcctttcattatgtct 681

                                                                       
Query: 482 ttattgggaaaagtacatgagtttgctttcaaagattatcttccctgactccttattgtt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttattgggaaaagtacatgagtttgctttcaaagattatcttccctgactccttattgtt 741

                                                                       
Query: 542 atgggggcagtaaccctctcttcctagcccaaatcgttgtcatttaacagtgctatgttt 601
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atggggggagtaaccctctcttcctagcccaaatcgttgtcatttaacagtgctatgttt 801

                                      
Query: 602 tttcttaaacgtctttggaaatgagtc 628
           |||||||||||||||||||||||||||
Sbjct: 802 tttcttaaacgtctttggaaatgagtc 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space:   629742
Effective search space used:   629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)