BAC Information

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BAC

Clone NameMSMg01-453H12
Chromosome14 (Build37)
Map Location 54,630,453 - 54,803,941
singlet/doubletdoublet
Overlap geneA630038E17Rik, EG626545
Upstream geneC920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneDad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H12.T7 (MSMg01no453_h12.b1)MSMg01-453H12.TJ (MSMg01no453_h12.g1)
ACCAG540473AG540474
length774761
length of high quality
(start - end)		645 (51 - 695)654 (81 - 734)
definitionCHROMAT_FILE: MSMg01no453_h12.b1 PHD_FILE: MSMg01no453_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:21 2005CHROMAT_FILE: MSMg01no453_h12.g1 PHD_FILE: MSMg01no453_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,630,453 - 54,631,093)(54,803,288 - 54,803,941)
sequence
NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTATGTATACTAAAATTGTTAAAATAGCCCAAATTCGCTT
TAATTTATAACAAAGATTTTAAAATCCTGGTTAAATTAAAAATTTAAAAA
TCATCTTAAAGAATAGACTTTCAAGGATATCTGAGAAGGAAAAAGAAGAT
GGCAGAGTGGAGCAGCATGCATCAGAGAGAAACAGAACTAGGTGTGCAGC
AGCAGCAACAGGTTTGGAGTGTGACTGCTGTGGACAGGAGCATGCTTTCC
TGCTCCAAGTTGCTACTTGGGTGGCAAGGAGGCTACAACCATGCCCACCT
GAATCTATCATGGCCTGCTAGGTCGGTGCCACAGTTCAGCCTGAAAACCA
GTCCTGCTACCACCTCTTGCCCCTCTGTGGGAAGGAGAGCAGCAGCTGCT
TTCGATTGACTGTATTCTATGTCTGAGTAGCCATTTCTGAGGAGCTCCCT
GCAACAAGATCATTGCTCAAGAAGGAGAAATGGAAGCCAAAGCCATGAAT
TATCTAACTTAAGGAAACAGAACTGAAAGAAGCCAATAAATCAAAAGTTC
ATAAGGACAAATGTCTTAGGGTTTCTATTGCTGCAATGAAACGCCATGAG
CAAAAGCGAGTTGTAGAGGTAAAGGCTTCTTTTCACTTCTTGCGGTCCAT
CATTCATGGAAGTCAGGCTATTAAATCAAGGAAAGGCGTGATGCAAGCAA
GAAGTATGTTTTGTAGGGAGCATG

TTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGCAGAAATGTGTTGTC
AAAGCTACTAACACAAAAAAAACTTATTTAGGGAAAAATAAGGGAGAAGT
TGTCTGTCATGTGTATCTTTCACAATGAAGTTGGTAGACAAAACCACTTC
ATCTACTGGAAAAGCTAGGCTTGGAAAAAGGCCACCGGATTCTGAGGTCT
AACGATGAGAGAGAAGACACAGCTGTCCTCAGAGCAGTGATGAGCATAAA
TTAGGTCCCTGGGCAGTCTAGTCCCCTCCACAGTTGGCAACATTAAAAGG
AATCCGTCTATGTTATTTTTAAAAAAATGAATATGACCCTTTTAATGGTT
AAACTGGCAGTGTCTGTAGAGCCAGACATTGTATCCTCCTAGAGAATATC
TGGGGATGCAAAGAACAGTATTGCTCTAAACCCAGGGAACAGGAGAAGAC
ACACTTACATGGTAGACATGGAATGACTTTTGTGCCAGATCCAAATGTCA
GCGCACTTGCAAAGCCTGTCTGCCACAGTGGCTGACTCTACAACAAAAAC
TTCCTCAGAACCACACATGGGCTCAAGGTGGAAGCTAAAACATTTTAGGC
CCGAGAGGAGATTCAGACGTATGTATCACCAGAGAGATGCTGTTCCTGAC
TCCTGAGGCTTCTCTTCATCCTGGCCTCTCCCCAGTCTTCTAGTAGCCAC
CTAGGAACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h12.b1 MSMg01no453_h12.b1 CHROMAT_FILE:
MSMg01no453_h12.b1 PHD_FILE: MSMg01no453_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:21 2005
         (645 letters)



>mm_chr14_54630249_54631293
          Length = 1045

 Score = 1224 bits (633), Expect = 0.0
 Identities = 639/641 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctatgtatactaaaattgttaaaatagcccaaattcgctttaatttataacaaa 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctatgtaaattaaaattgttaaaatagcccaaattcgctttaatttataacaaa 264

                                                                       
Query: 65  gattttaaaatcctggttaaattaaaaatttaaaaatcatcttaaagaatagactttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattttaaaatcctggttaaattaaaaatttaaaaatcatcttaaagaatagactttcaa 324

                                                                       
Query: 125 ggatatctgagaaggaaaaagaagatggcagagtggagcagcatgcatcagagagaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggatatctgagaaggaaaaagaagatggcagagtggagcagcatgcatcagagagaaaca 384

                                                                       
Query: 185 gaactaggtgtgcagcagcagcaacaggtttggagtgtgactgctgtggacaggagcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaactaggtgtgcagcagcagcaacaggtttggagtgtgactgctgtggacaggagcatg 444

                                                                       
Query: 245 ctttcctgctccaagttgctacttgggtggcaaggaggctacaaccatgcccacctgaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttcctgctccaagttgctacttgggtggcaaggaggctacaaccatgcccacctgaat 504

                                                                       
Query: 305 ctatcatggcctgctaggtcggtgccacagttcagcctgaaaaccagtcctgctaccacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctatcatggcctgctaggtcggtgccacagttcagcctgaaaaccagtcctgctaccacc 564

                                                                       
Query: 365 tcttgcccctctgtgggaaggagagcagcagctgctttcgattgactgtattctatgtct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcttgcccctctgtgggaaggagagcagcagctgctttcgattgactgtattctatgtct 624

                                                                       
Query: 425 gagtagccatttctgaggagctccctgcaacaagatcattgctcaagaaggagaaatgga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagtagccatttctgaggagctccctgcaacaagatcattgctcaagaaggagaaatgga 684

                                                                       
Query: 485 agccaaagccatgaattatctaacttaaggaaacagaactgaaagaagccaataaatcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agccaaagccatgaattatctaacttaaggaaacagaactgaaagaagccaataaatcaa 744

                                                                       
Query: 545 aagttcataaggacaaatgtcttagggtttctattgctgcaatgaaacgccatgagcaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagttcataaggacaaatgtcttagggtttctattgctgcaatgaaacgccatgagcaaa 804

                                                    
Query: 605 agcgagttgtagaggtaaaggcttcttttcacttcttgcgg 645
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agcgagttgtagaggtaaaggcttcttttcacttcttgcgg 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_h12.g1 MSMg01no453_h12.g1 CHROMAT_FILE:
MSMg01no453_h12.g1 PHD_FILE: MSMg01no453_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:21 2005
         (654 letters)



>mm_chr14_54803088_54804141
          Length = 1054

 Score = 1257 bits (650), Expect = 0.0
 Identities = 653/654 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggcagaaatgtgttgtcaaagctactaacacaaaaaaaacttatttagggaaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 attggcagaaatgtgttgtcaaagctactaacacaaaaaaaacttatttagggaaaaata 795

                                                                       
Query: 61  agggagaagttgtctgtcatgtgtatctttcacaatgaagttggtagacaaaaccacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agggagaagttgtctgtcatgtgtatctttcacaatgaagttggtagacaaaaccacttc 735

                                                                       
Query: 121 atctactggaaaagctaggcttggaaaaaggccaccggattctgaggtctaacgatgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atctactggaaaagctaggcttggaaaaaggccaccggattctgaggtctaacgatgaga 675

                                                                       
Query: 181 gagaagacacagctgtcctcagagcagtgatgagcataaattaggtccctgggcagtcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gagaagacacagctgtcctcagagcagtgatgagcataaattaggtccctgggcagtcta 615

                                                                       
Query: 241 gtcccctccacagttggcaacattaaaaggaatccgtctatgttatttttaaaaaaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtcccctccacagttggcaacattaaaaggaatccgtctatgttatttttaaaaaaatga 555

                                                                       
Query: 301 atatgacccttttaatggttaaactggcagtgtctgtagagccagacattgtatcctcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atatgacccttttaatggttaaactggcagtgtctgtagagccagacattgtatcctcct 495

                                                                       
Query: 361 agagaatatctggggatgcaaagaacagtattgctctaaacccagggaacaggagaagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agagaatatctggggatgcaaagaacagtattgctctaaacccagggaacaggagaagac 435

                                                                       
Query: 421 acacttacatggtagacatggaatgacttttgtgccagatccaaatgtcagcgcacttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acacttacatggtagacatggaatgacttttgtgccagatccaaatgtcagcgcacttgc 375

                                                                       
Query: 481 aaagcctgtctgccacagtggctgactctacaacaaaaacttcctcagaaccacacatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 374 aaagcctgtctgccacagtggctgactctacaacaaaaacttcctcagagccacacatgg 315

                                                                       
Query: 541 gctcaaggtggaagctaaaacattttaggcccgagaggagattcagacgtatgtatcacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gctcaaggtggaagctaaaacattttaggcccgagaggagattcagacgtatgtatcacc 255

                                                                 
Query: 601 agagagatgctgttcctgactcctgaggcttctcttcatcctggcctctcccca 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agagagatgctgttcctgactcctgaggcttctcttcatcctggcctctcccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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