BAC Information

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BAC

Clone NameMSMg01-454C13
Chromosome14 (Build37)
Map Location 12,394,226 - 12,394,501
singlet/doubletsinglet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454C13.T7 (MSMg01no454_c13.b1)MSMg01-454C13.TJ (MSMg01no454_c13.g1)
ACCAG541001AG541002
length767746
length of high quality
(start - end)
278 (77 - 354)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no454_c13.b1 PHD_FILE: MSMg01no454_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:16 2005CHROMAT_FILE: MSMg01no454_c13.g1 PHD_FILE: MSMg01no454_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGTAGTGGCGCGGAA
TTCCTATCAGTTACCAAGAAACGCCGAAAGCTGTCTGGTTTCTCATGCCG
ACTGCCTCATAAAGTCTTCAGCAGCTTAAATCAGATCGGTACATTTATCT
GGATGGATTTGCACGAAGGACACAGCCATTAGCATTTTACCAGGCCTAGG
AACAGAGTCTAGATGAGTGAGGAAATACTGTTATCTTTCAAGATCTTTCC
TAACTTAAACCATGTATTTATTTATTTAGTGTGTGTGTATTTGTGCATGG
CGTGTGCCCGTGTGTGTGNGTGNGTGTGTGTGTGTGTGTGTGTGTGTGTG
NNNNNNTTTTTTTTTTTCCCCCCCCTTTTTNNTTNTTTTTCTTTTTTTTT
TTCCCTCTCCTTTCCCCCCTCTTTTTCTTTCCCCCCCCTCTCTCTTCTTT
CCTCTTCCCTCCCTTCTTTTTTTCTTTTTTTTTTTCCTTCCCCCTCCTTC
CCTTTTTCTTTNTCCTTTTTTCCCTCCTCTTTTTTTTCTTCCTCCTCTTC
TTTCTTCTTTCCCTCTTCCCTTNCTCTCTTTTCCCTTTCCCCTTTCCTTT
TTTCTCTTCTCTCTTCCTCTTTCTTTCTCTTTCCCCCCTCCCCCCTTCCT
TTTTTTTTTTTTTCTCCCCCCTTTTCCTCCCCTCTTTTCTCCCCTTTTTC
TCCCCCCTCTTCCTCCTCNTCTTCTTTCTCCCTTTTTTTTTTTCTTGTCC
CCCCTCGCCTCTTTTCT
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGACACTCCTCCTTCTTCACTCTCCTTTGTCTCTG
TTCCTTTGGTCCTTCCCCTTCTCTCTTCTCCTTTTCTTTTTTGACTGAAA
GCCAGAGTGGGTGAGCAGATGACACAGGAGAGAAGGGCGCCTAACCATGA
CAAGACCGGGCACTGATCAGTACATATTCCTGTGGGTCCNAGGGCTTAGT
TTCTCAGTTCATCACTGGCAAAAATGATGATAACAAAAAGGAAGCCTATT
TCTCAGCCTGAAAAGGATTTGATCATTCAACAACAAAACCTTTGGCTTGG
CTAAGACCACGGATAAGCGGTACACTAAAAGACAAGCAATGGAGAGAACT
GTTTGGTAACCGCTTGCAATGAAAGTGTGAGGACCTGGCTTCAACCATGT
TGAATCCCAGCTTGCACAGTTGGGGTGGAATGGGGGTGGGGTNNNNNNNN
NNNTTTCTTCTTCCCCCCTTCTTCTCCTCCCCCCCTTTTTTCCCCTTTTC
TTCCCCCCCCCCTTCCCTTTTTTCCGCCTCTTTCCTTCCCCCCCTCCCCT
NNNNCACGTATTCGTTTTTTTTGTGTTCTGTTGCTTTTTCCCCCTCTTCC
TTTGCCCTCCCCGCTCTCCCTTTTTTTTTTTTTTTTTTTCTTCCTCCCCC
CGCAGGTTCCTTTTTTTTCTTTCCCTCGATCTTTCCTCTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_c13.b1 MSMg01no454_c13.b1 CHROMAT_FILE:
MSMg01no454_c13.b1 PHD_FILE: MSMg01no454_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:16 2005
         (278 letters)



>mm_chr14_12394026_12394703
          Length = 678

 Score =  464 bits (240), Expect = e-135
 Identities = 266/280 (95%), Gaps = 10/280 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagctgtctggtttctcatgccgactgcctcataaagtcttcagcagcttaaatcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctgtctggtttctcatgccgactgcctcataaagtcttcagcagcttaaatcagat 260

                                                                       
Query: 61  cggtacatttatctggatggatttgcacgaaggacacagccattagcattttaccaggcc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 cggtacatttatctggatggatttgcatgaaggacacagccattagcattttaccaggcc 320

                                                                       
Query: 121 taggaacagagtctagatgagtgaggaaatactgttatctttcaagatctttcctaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggaacagagtctagatgagtgaggaaatactgttatctttcaagatctttcctaactt 380

                                                                       
Query: 181 aaaccatgtatttatttatttagtgtgtgtgtatttgtgcatggcgtgtgcccgtgtgtg 240
           ||| ||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcatgtatttattta----gtgtgtgtgtatttgtgcatggcgtgtgcccgtgtgtg 436

                                                   
Query: 241 ----tgngtgn--gtgtgtgtgtgtgtgtgtgtgtgtgtg 274
               || |||   |||||||||||||||||||||||||||
Sbjct: 437 cccgtgtgtgcccgtgtgtgtgtgtgtgtgtgtgtgtgtg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)