BAC Information

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BAC

Clone NameMSMg01-454O06
Chromosome14 (Build37)
Map Location 88,206,236 - 88,356,545
singlet/doubletdoublet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454O06.T7 (MSMg01no454_o06.b1)MSMg01-454O06.TJ (MSMg01no454_o06.g1)
ACCAG541560AG541561
length732749
length of high quality
(start - end)
187 (322 - 508)428 (78 - 505)
definitionCHROMAT_FILE: MSMg01no454_o06.b1 PHD_FILE: MSMg01no454_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:14 2005CHROMAT_FILE: MSMg01no454_o06.g1 PHD_FILE: MSMg01no454_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,206,236 - 88,206,422)(88,356,118 - 88,356,545)
sequence
CGTCAATXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAAAGCGAGCGCNG
GAATCATACCATGACAACAAATATAAATGTGGGCTTACTCTGAATAGTCT
CCAAACTATTGTTTCCTAGCCAGTTACATTTCCTCTGTAGAGTAGCACAT
TAATTGCCTGCTTTTAATTTTATGGACACCTCTGCCACTTTGCATTCCTT
TGAGGTGGGGGCAGGTTAAGGAGAATTAAGTGCTACCCCATGGTGCTTAT
TGGCTCATATTTCTTGCTTATCTTTCCCAGTGGCTTTTCCCTAGAGCAAG
AAAGAAATCTTTCTAGTTATTATTTTCTTTTGAAAGGAGAAGTGGCTTGT
CATAATTGATAATAATCTTTTAGTAAGATTAGGCAAAATATATAGAACTT
CAACTAGCTTTTAATTTAAAAAGCATATTTGCTCTTCAGAAGGTTAAAGA
TAGATGCCATTGTCGTCATAATGAACATTCACTAGCCTCTTATAATCCAC
TGCTAAGAAAAAGAGTCATAAGTGGTAAACACCTTGGTGGGATTATTTTA
TAAATAAAAGCTTCAGACTGATACAATCCAATGGCCGTATTCTCTACTTT
TTTTTTTCATTGTAGGGTATCTGACCCTTTTTATTTTTGCTATTTTTTTC
TGACTAATCCTAATCCTGACCTGATTTAGACTCCCACATCCCGCTAGTGC
TTTGTACTCAATTGTCATCGTTATTTCCCCGG
TTCGATGAAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAGAAATTATCAGTCACA
TAAATTGAAATAAAACACTTCTGAATATCTTGATTTTAGATTTTTTGTTA
CTTAATGCTTAAATATTCTCATGCAAGTATATACTGTACATGAAGTATAT
TCTCTCCCATGGTTGTGATTGTCCTTTTTTAAACTCTCCCCTCCCATTTG
GACCTTTCTTCCCTTGGCAGATCTAGTTCTCCAGTTACATCGTATGTTCA
TACATTATTTCATGTATCTATGTGAAGTCTAGGAATCACAAATGAAGAAA
AATGCACATTATTTGCCCTTCCAACACTAGCTTATTTAACTTGATACATC
TATTTTCAGGGGAAAAAAACATAATTTCCTAAATGATCTCTCATTTCTAT
GTCAAATATTCTTTTGTTGTAAGGATGCAATTTATTTTTTAAATTAATTT
TGGTCAATGGAAGCATTCTTGGAAGGAGATAAAAGCTTTGCTAGATGACT
TCTCAGACTGAAGCACTCATTTGTAGATGACCACTGCAGCGTGTTATATT
TGTAGCATAAGTTTTACTTGACTTTTTAGGCTTGAAAAAACAAAGTTTTA
TCCACAAATGTATTTTATGAAATTTATTTTATACAAAAACTTGCCCCCCA
ATTAAATTTCTTTTTTCCACCCTCGCTTTTATCACATTTCCCTGTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_o06.b1 MSMg01no454_o06.b1 CHROMAT_FILE:
MSMg01no454_o06.b1 PHD_FILE: MSMg01no454_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:14 2005
         (187 letters)



>mm_chr14_88206036_88206622
          Length = 587

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttcttttgaaaggagaagtggcttgtcataattgataataatcttttagtaagatta 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 attttcttttgaaaggagaagtggcttgtcagaattgataataatcttttagtaagatta 260

                                                                       
Query: 61  ggcaaaatatatagaacttcaactagcttttaatttaaaaagcatatttgctcttcagaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaaatatatagaacttcatctagcttttaatttaaaaagcatatttgctcttcagaa 320

                                                                       
Query: 121 ggttaaagatagatgccattgtcgtcataatgaacattcactagcctcttataatccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttaaagatagatgccattgtcgtcataatgaacattcactagcctcttataatccact 380

                  
Query: 181 gctaaga 187
           |||||||
Sbjct: 381 gctaaga 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no454_o06.g1 MSMg01no454_o06.g1 CHROMAT_FILE:
MSMg01no454_o06.g1 PHD_FILE: MSMg01no454_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:14 2005
         (428 letters)



>mm_chr14_88355945_88356772
          Length = 828

 Score =  820 bits (424), Expect = 0.0
 Identities = 427/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcacagaaattatcagtcacataaattgaaataaaacacttctgaatatcttgatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttcacagaaattatcagtcacataaattgaaataaaacacttctgaatatcttgatttt 542

                                                                       
Query: 61  agattttttgttacttaatgcttaaatattctcatgcaagtatatactgtacatgaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agattttttgttacttaatgcttaaatattctcatgcaagtatatactgtacatgaagta 482

                                                                       
Query: 121 tattctctcccatggttgtgattgtccttttttaaactctcccctcccatttggaccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattctctcccatggttgtgattgtccttttttaaactctcccctcccatttggaccttt 422

                                                                       
Query: 181 cttcccttggcagatctagttctccagttacatcgtatgttcatacattatttcatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cttcccttggcagatctagttctccagttacatcgtatgttcatacattatttcatgtat 362

                                                                       
Query: 241 ctatgtgaagtctaggaatcacaaatgaagaaaaatgcacattatttgcccttccaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctatgtgaagtctaggaatcacaaatgaagaaaaatgcacattatttgcccttccaacac 302

                                                                       
Query: 301 tagcttatttaacttgatacatctattttcaggggaaaaaaacataatttcctaaatgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagcttatttaacttgatacatctattttcaggggaaaaaaacataatttcctaaatgat 242

                                                                       
Query: 361 ctctcatttctatgtcaaatattcttttgttgtaaggatgcaatttattttttaaattaa 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 241 ctctcatttctatgtcaaatattcttttgttgtagggatgcaatttattttttaaattaa 182

                   
Query: 421 ttttggtc 428
           ||||||||
Sbjct: 181 ttttggtc 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)