BAC Information

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BAC

Clone NameMSMg01-455I09
Chromosome14 (Build37)
Map Location 10,668,504 - 10,855,523
singlet/doubletdoublet
Overlap geneFhit, LOC100042415
Upstream geneLOC100041948
Downstream geneLOC100041974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455I09.T7 (MSMg01no455_i09.b1)MSMg01-455I09.TJ (MSMg01no455_i09.g1)
ACCAG542043AG542044
length722726
length of high quality
(start - end)
476 (70 - 545)529 (78 - 606)
definitionCHROMAT_FILE: MSMg01no455_i09.b1 PHD_FILE: MSMg01no455_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:04 2005CHROMAT_FILE: MSMg01no455_i09.g1 PHD_FILE: MSMg01no455_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,668,504 - 10,668,979)(10,854,996 - 10,855,523)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAATAGAGGATCCGCG
GAATTCCATATTCGTTCATTAGTTATAAGTGGCAATTTTGATATAGTTAT
ATCTCTCCTACTTTACTACTCTTGTTAAATCTCTTACAATGCATAACATA
AAATTTCTCACAGGTATATATGGGTAGGACAGGCATACTTTTACTGGGAA
TGGTACTATATGTGTTGCCAGGCATCCAGCTGGGATCTGGAAACTCATTG
TGTAAAACGAGGACAGATTACTGTACTAATAACATACTACTAGAGGAACA
GTTACATTTTATTTTTTATCATCACACGGTAAGTTACAACAGCAACATTT
CTAGCAAGGAACTCACTCTTCTTTGGAGTTAAATTCTGAAAACTCTAAAT
ATCATCTAACAACAGAGACAGACTCTTCTTGCTGCTCTAACCATATAACA
CCTGTGCTAGGCCACAGGTAAGAATATATGTCTGCATTGGTGGCTGTCTC
ACTGATGTGTGTAGTGACTGAAAACCATCAGTATGTCTAGCAGAGACTAT
AGAAGGAATTCATGCCACAAAACTCATTGCTGTCTAACCCAGAGTCCATG
TGTCCTCTCTTTTTTAAAGCAAGTGGCATTAAATCTATATCCTAAACTGG
TTACCATGGTCCGGCTGCTGCTAAGACCTGGTCCGTTGGATCTTAGGTTT
CAAGGGCCCAAGATGATAAAGN
NCCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTAATCTGTAGAACCTTTTT
TTTTTTCATCAAAATGTAAAATAAATTCCTTTTCAGTACACTAATGGGAT
CCACTCAGGAAAAGTGGAGGGCAGATTTCCAGTTCTTTAGCAGTGATTAA
CTCTTCATTTTTCATTTCAGGATATGCACTATGAGAAAGTTTATAAACAA
TGCATGGTTCATTTACAAATAACAGAGCATTTTCACCCATTCCATGCCCT
GGTGTCCTCCTGTAGTATTACCTGCCTTCCCTTTGTGGCCATTTTTGGAA
GTAGGGTCCTCAGCCTGCAGCTGGCATTGCTGGTGTTTCCCACATGTCCT
TACCAAGCCTTTCTTTTCATTTGTTCCCTTTCAAATGGCAGCTGGTCAGA
TGCTCTAGAGGCTTAAGCTCAAAAACACATCCTAGGACCATGAGCTTAAG
CCAGGGTGAATACTTGTTAGGAGTTCAGTTATTCAGCCAACACTGAGCCC
TTACTCTGGGGGGGTGGGACTTGGCTCCGTTACAAAGCATCCCCTGCTCC
CCTGGTATGTTAAGAGTTTCTCTGGGGACAGTGAACACAGCTAGATGCCC
CTGCTTTCTTCATCCTTCGCACTCCCTTTATGTTGGCATCCGGCTGACTT
GATTCTTATTTGCCAGCCCCCGGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_i09.b1 MSMg01no455_i09.b1 CHROMAT_FILE:
MSMg01no455_i09.b1 PHD_FILE: MSMg01no455_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:04 2005
         (476 letters)



>mm_chr14_10668304_10669179
          Length = 876

 Score =  851 bits (440), Expect = 0.0
 Identities = 467/476 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagttataagtggcaattttgatatagttatatctctcctactttactactcttgttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagttataagtggcaattttgatatagttatatctctcctactttactactcttgttaaa 260

                                                                       
Query: 61  tctcttacaatgcataacataaaatttctcacaggtatatatgggtaggacaggcatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcttacaatgcataacataaaatttctcacaggtatatatgggtaggacaggcatact 320

                                                                       
Query: 121 tttactgggaatggtactatatgtgttgccaggcatccagctgggatctggaaactcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 321 tttactgggaatggtactatatgtgttgccaggcatccagctgggatctgggaacacatt 380

                                                                       
Query: 181 gtgtaaaacgaggacagattactgtactaataacatactactagaggaacagttacattt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gtgtaaaacaaggacagattactgtactaataacatactactagaggaacaattacattt 440

                                                                       
Query: 241 tattttttatcatcacacggtaagttacaacagcaacatttctagcaaggaactcactct 300
           ||  |   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatcacatcatcacacggtaagttacaacagcaacatttctagcaaggaactcactct 500

                                                                       
Query: 301 tctttggagttaaattctgaaaactctaaatatcatctaacaacagagacagactcttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttggagttaaattctgaaaactctaaatatcatctaacaacagagacagactcttct 560

                                                                       
Query: 361 tgctgctctaaccatataacacctgtgctaggccacaggtaagaatatatgtctgcattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgctctaaccatataacacctgtgctaggccacaggtaagaatatatgtctgcattg 620

                                                                   
Query: 421 gtggctgtctcactgatgtgtgtagtgactgaaaaccatcagtatgtctagcagag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtggctgtctcactgatgtgtgtagtgactgaaaaccatcagtatgtctagcagag 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no455_i09.g1 MSMg01no455_i09.g1 CHROMAT_FILE:
MSMg01no455_i09.g1 PHD_FILE: MSMg01no455_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:04 2005
         (529 letters)



>mm_chr14_10854796_10855724
          Length = 929

 Score =  990 bits (512), Expect = 0.0
 Identities = 524/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctaatctgtagaacctttttttttttcatcaaaatgtaaaataaattccttttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cttctaatctgtagaacctttttttttttcatcaaaatgtaaaataaattccttttcagt 669

                                                                       
Query: 61  acactaatgggatccactcaggaaaagtggagggcagatttccagttctttagcagtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 acactaatgggatccactcaggaaaagtggagggcagatttccagttctttagcagtgat 609

                                                                       
Query: 121 taactcttcatttttcatttcaggatatgcactatgagaaagtttataaacaatgcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taactcttcatttttcatttcaggatatgcactatgagaaagtttataaacaatgcatgg 549

                                                                       
Query: 181 ttcatttacaaataacagagcattttcacccattccatgccctggtgtcctcctgtagta 240
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 548 ttcatttacaaataacagagcattttcaaccattccatgccctggtgtcctcctgtagga 489

                                                                       
Query: 241 ttacctgccttccctttgtggccatttttggaagtagggtcctcagcctgcagctggcat 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttacctgccttccctttgtggccttttttggaagtagggtcctcagcctgcagctggcat 429

                                                                       
Query: 301 tgctggtgtttcccacatgtccttaccaagcctttcttttcatttgttccctttcaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgctggtgtttcccacatgtccttaccaagcctttcttttcatttgttccctttcaaatg 369

                                                                       
Query: 361 gcagctggtcagatgctctagaggcttaagctcaaaaacacatcctaggaccatgagctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gcagctggtcagatgctctagaggcttaagctcaaaaacacatcctaggaccatgagctt 309

                                                                       
Query: 421 aagccagggtgaatacttgttaggagttcagttattcagccaacactgagcccttactct 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 308 aagccagggtgaatacttgttaggaattcagttattcagccaacactgagcccttactct 249

                                                           
Query: 481 gggggggtgggacttggctccgttacaaagcatcccctgctcccctgg 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gggggggtgggacttggctccgttacaaagcatcccctgctcccctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)