BAC Information

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BAC

Clone NameMSMg01-456D05
Chromosome14 (Build37)
Map Location 99,522,647 - 99,661,854
singlet/doubletdoublet
Overlap geneD14Ertd581e
Upstream geneDach1, LOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3
Downstream geneLOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456D05.T7 (MSMg01no456_d05.b1)MSMg01-456D05.TJ (MSMg01no456_d05.g1)
ACCAG542559AG542560
length719779
length of high quality
(start - end)
492 (70 - 561)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no456_d05.b1 PHD_FILE: MSMg01no456_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:56 2005CHROMAT_FILE: MSMg01no456_d05.g1 PHD_FILE: MSMg01no456_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,522,647 - 99,523,138)(99,661,607 - 99,661,854)
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATATTTCCATATATAAAATTCAAAAAGATTAACAGTTCTTG
TGACTCTTGATATTTGAAATTAAATCTGTTAAATACTTAAGAGTTTATGC
TCATTACTCTTAAATATTATAGTCGTTCTTAGAATTTAGAAATCACTAGG
TCCTAACTTTAATGCATTTACAAAGAAGACATTCACAGTTAAAATATTTT
GATAGTTTTATTTGTTTTGTAATTTGGTGTGTTTTACACGAGCTGTTAGA
AATAGTTCTCTCAAAGCGTTTCACAGATGTCACTAAATTGTGAGTGGAAT
CCACATTACAAAAAAAACCCTTGAAGAAGCTCTCAATGTATGCTGTTATT
AAAGCTCTAAGTGAATGCGAGAATTAGGGAGATCTTGTTGACCTGAAACC
TGATACACATATTTTGATAAAACAAAGAAGCTAGGCTAAGATAGATAGCT
CATCTGTAGCTAGGGGAATGGGGCATGTGGTAGACCAAGCAAGAACTCAG
TATAAACCTCAAAACTAGCTGTTCTAACTGGACCCTAGTTTAGTCCCCAG
CGCGCGCGCGTGTGCGCGCGCACACACACACACACACACACGAGGGGGGT
CACAAAGGCTTGTAACTCCCACTCTGTGGGATTTGGAACCCTTCCTCCCA
GAAAGAGGCTGCTAAACCT
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCACTTTGGGTATAGAGTTT
TCAAGGCCAGGAGGAGCTACGCGAGAACAGTTCTCAAGCAAGCAAACAAA
AAGTATAACAGGAAACAGAGAAAGGACTTCTAGGCTTCGGGAATGTATAG
GCCTAGAGACAACACTTGGGGATAATTTTGGCTTACATTTTAAGTCCTAG
GTGCTCCACGCATACAGTGAGTAGCAGCACTCCAGTATCATGAGACTCGG
GTCCCCCAACAGCATGTGAGAAAGTGTGACGACCACCCTGGGGCAGCAAG
CAGCTTTAGGGGATAACGGAACCTTAACATCTGGGGTCTGGTAGAAGCAA
GCGGCATCACTGAGGGAGGCCTTGATGGGCTACAGACCCTACTGAAGCTC
TCTGAGTCCTGGCCATGGCCAGATGAGCCAGCTTGCTCTGTCACGTGACC
GCCGCCAGTAGAGGGCTTGTCTCTACCTTAGGCTCATAGACAATGGTGTC
ATTTGAACCTGCCTGCCCAAGCAAGTCTTCCTTTCTCTAAGAAATGTATT
TCCTTAGGTATTTTGTCTCTTGTACCCCTGTGACTAAAACTGTTGGATTT
ATTTTTTCCTTTTTATCTTGTGTTTTGTTTTCCTTTTATCTGTTGTTTTT
TTCGCTTCCCCCTCTAAAGTTCATTAAAATGATGTGTCTCTAAAATTCTA
TAATCTGTAATCCCTCTATTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_d05.b1 MSMg01no456_d05.b1 CHROMAT_FILE:
MSMg01no456_d05.b1 PHD_FILE: MSMg01no456_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:56 2005
         (492 letters)



>mm_chr14_99522447_99523338
          Length = 892

 Score =  944 bits (488), Expect = 0.0
 Identities = 491/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atataaaattcaaaaagattaacagttcttgtgactcttgatatttgaaattaaatctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atataaaattcaaaaagattaacagttcttgtgactcttgatatttgaaattaaatctgt 260

                                                                       
Query: 61  taaatacttaagagtttatgctcattactcttaaatattatagtcgttcttagaatttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatacttaagagtttatgctcattactcttaaatattatagtcgttcttagaatttag 320

                                                                       
Query: 121 aaatcactaggtcctaactttaatgcatttacaaagaagacattcacagttaaaatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcactaggtcctaactttaatgcatttacaaagaagacattcacagttaaaatattt 380

                                                                       
Query: 181 tgatagttttatttgttttgtaatttggtgtgttttacacgagctgttagaaatagttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatagttttatttgttttgtaatttggtgtgttttacacgagctgttagaaatagttct 440

                                                                       
Query: 241 ctcaaagcgtttcacagatgtcactaaattgtgagtggaatccacattacaaaaaaaacc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaaagcggttcacagatgtcactaaattgtgagtggaatccacattacaaaaaaaacc 500

                                                                       
Query: 301 cttgaagaagctctcaatgtatgctgttattaaagctctaagtgaatgcgagaattaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgaagaagctctcaatgtatgctgttattaaagctctaagtgaatgcgagaattaggg 560

                                                                       
Query: 361 agatcttgttgacctgaaacctgatacacatattttgataaaacaaagaagctaggctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatcttgttgacctgaaacctgatacacatattttgataaaacaaagaagctaggctaa 620

                                                                       
Query: 421 gatagatagctcatctgtagctaggggaatggggcatgtggtagaccaagcaagaactca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatagatagctcatctgtagctaggggaatggggcatgtggtagaccaagcaagaactca 680

                       
Query: 481 gtataaacctca 492
           ||||||||||||
Sbjct: 681 gtataaacctca 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no456_d05.g1 MSMg01no456_d05.g1 CHROMAT_FILE:
MSMg01no456_d05.g1 PHD_FILE: MSMg01no456_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:56 2005
         (248 letters)



>mm_chr14_99661407_99662054
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcccactttgggtatagagttttcaaggccaggaggagctacgcgagaacagttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaggcccactttgggtatagagttttcaaggccaggaggagctacgcgagaacagttctc 389

                                                                       
Query: 61  aagcaagcaaacaaaaagtataacaggaaacagagaaaggacttctaggcttcgggaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aagcaagcaaacaaaaagtataacaggaaacagagaaaggacttctaggcttcgggaatg 329

                                                                       
Query: 121 tataggcctagagacaacacttggggataattttggcttacattttaagtcctaggtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tataggcctagagacaacacttggggataattttggcttacattttaagtcctaggtgct 269

                                                                       
Query: 181 ccacgcatacagtgagtagcagcactccagtatcatgagactcgggtcccccaacagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccacgcatacagtgagtagcagcactccagtatcatgagactcgggtcccccaacagcat 209

                   
Query: 241 gtgagaaa 248
           ||||||||
Sbjct: 208 gtgagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)