BAC Information

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BAC

Clone NameMSMg01-456K20
Chromosome14 (Build37)
Map Location 15,376,872 - 15,377,115
singlet/doubletsinglet
Overlap geneLOC667152
Upstream geneSynpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1
Downstream geneLOC100042147, Slc4a7, Nek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456K20.T7 (MSMg01no456_k20.b1)MSMg01-456K20.TJ (MSMg01no456_k20.g1)
ACCAG542923AG542924
length831754
length of high quality
(start - end)
---245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no456_k20.b1 PHD_FILE: MSMg01no456_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:34 2005CHROMAT_FILE: MSMg01no456_k20.g1 PHD_FILE: MSMg01no456_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATTTGCGGCGATATACGNTCACTTTCACACAGGTCCGNGGAAT
TCAAATTGCATCTCGCCACAGGGAAATCTTCCCTTAAGAGAGAGAGAGAG
AGAGACTTTTAGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT
TTTTCTCCTTTTCCCCCCTCCCCTTTCCCCCTTTTTTTCCTTTCTCCCCC
TCTTCTCCCCTTTCCCCCCTTGTTCCTTCCTTCCTCCTTTCCCTCTCTTT
TTTTTTTCTCTCCCTTCCCCCCCTTCTTTTTTTCTCTTCCCTCTCTTCTT
TTTTTTTCTTCCTTGCCCCACCCCCTTTTTTTTTTTTCCCCCCCCCCCCC
CCCGCCGTCCTCCTTCTTTCCCTTTTTTTTCCTTCCTCCCTTTTTCCCTT
TCTCCTCCCCTCCCTTTCTTTTCCTTTCCTGCTTTGTCCCTTTTTCCCCC
CCCCCCTTCTTTGTTTTCTTTTTTTCCTCTCTCTCCCCCCCTTTTCTTTT
TCCTCCTCCTTTTCCCCTTTTTTCTTCCCTTCCCCTTTTTTCTTCTCTCT
CTTTTTTTCTCCCTCTCTTCCCTCCTTTTTTTCTCTCCTCCCCCCCCCTC
TTCCTCTTCTCTCTTTCCCTGTTTCCCCCCCCCTCCCTCTTTTTCCTCTT
CTCTCCTCTCCTTTTTTTCCTTTCCTCCTTCCTTTCTTCCTCCCTCTTTC
TTTCTCCTTTGCCTCCTCCTTTCCTCTCCCTTATTCCCTTCTTTCCCCCC
CTCTTCCTTTCTTCTCTTTTCTCTCCCTTCTCCCCCCTTCTTTCTCTCCT
CCTCCCTTATTTTTTTCTCCCCCTTCTCTTG
NNCCCCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGAAAGATTAATGCTCATTA
TCTTGCATTGTGAGCTATGCTGGTGTGTGCTAACTTGATTGCTTTACTTT
GGAACATGCTGAAACAGCCCAAGGTCCGACTAAACAGTGCTCACAAAGTC
AAGGGCTTCAGTGTGCTTGAAATGGGGTGACGTTTAGAGAAGCAGGGACG
CTCCTGATCTGGCTACTGTAACTCAGTCCTGAGCCAAGGCTGCCTGAAGC
ATTCTCTGATCTGCTCAAAGCTTTCTCTTAGTTGTCTTGGGCAGATGTAG
AGATAATTGTTGTCACCTTCCAGCACCTGAGTCCCCATCTCCCTTATAGA
GGAAAACACATTCCTATACCCCCCCCACCACAGAATAGATATATCCCTAC
TGTTACCAACCCTCAACTCAGATACTGAAGCACTGAGGCATTATAGATAT
CCAGGCATAATTAACCCTTATTCAGGCTCTTATTTTGATAATGAGGAATC
ATGATCCATATTATTTACGGCATACCCCTGAGTCTTTTTTAAACTGCTCC
AGTGCACTAATTTTTGTTTATACAACCCTTTTTCTTTAACTCTGACTCCC
TTTTTTTTTCTTTTCCCCTCTACTTTCCCTCTTCCTTCTTGGTTTTCCTC
ATCTTCTCTCTCTTTCCATTCCCTCTTTCTTTCCTCCCTCTTTTTTCTTC
CCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_k20.g1 MSMg01no456_k20.g1 CHROMAT_FILE:
MSMg01no456_k20.g1 PHD_FILE: MSMg01no456_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:35 2005
         (245 letters)



>mm_chr14_15376672_15377315
          Length = 644

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagaaagattaatgctcattatcttgcattgtgagctatgctggtgtgtgctaacttg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 attagaaagattaatgctcattatcttccattgtgagctatgctggtgtgtgctaacttg 260

                                                                       
Query: 61  attgctttactttggaacatgctgaaacagcccaaggtccgactaaacagtgctcacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgctttactttggaacatgctgaaacagcccaaggtccgactaaacagtgctcacaaa 320

                                                                       
Query: 121 gtcaagggcttcagtgtgcttgaaatggggtgacgtttagagaagcagggacgctcctga 180
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct: 321 gtcaagggcttcagtgtgcttgaagtggg-tgacgtttagagaagcagggacgctccgga 379

                                                                       
Query: 181 tctggctactgtaactcagtcctgagccaaggctgcctgaagcattctctgatctgctca 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctggctactgtaactcagtcctgagccaaggctgcctgaagcattctctgatctgctca 439

                
Query: 241 aagct 245
           |||||
Sbjct: 440 aagct 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)