BAC Information

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BAC

Clone NameMSMg01-456P03
Chromosome14 (Build37)
Map Location 39,886,996 - 39,887,242
singlet/doubletsinglet
Overlap geneNrg3
Upstream geneLOC100041521
Downstream geneLOC100040439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456P03.T7 (MSMg01no456_p03.b1)MSMg01-456P03.TJ (MSMg01no456_p03.g1)
ACCAG543128AG543129
length781787
length of high quality
(start - end)
342 (44 - 385)247 (81 - 327)
definitionCHROMAT_FILE: MSMg01no456_p03.b1 PHD_FILE: MSMg01no456_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:57 2005CHROMAT_FILE: MSMg01no456_p03.g1 PHD_FILE: MSMg01no456_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGGTAGTCTGGTTGCTTGATCTTGTTGTTCTTCCTATGGCGTTGCA
AACCCTTACAGCTCCTTCAGTCCTTTCTCTAACTCCTCCATTGGGGACCC
TGTGCTCAGTCCAGAGGTTGACTGTGAGCATATGCCTCTGTATTTGTCAG
GCTCTGGCAGATCCTCTAGGAAGACAGCTATATCAGGCTCCTGTTAGGAA
GCACTTCTTGGCACCTGCAATAGTGTCTGGGTATTCTGTCTGTTTATGGG
ATGAGTCCCATGTAGGGCAGTCTCTGGATAGCCTTTCCTTCAGGCTCTAT
TCCACACTTTGTCTCAGCCCGCATTCTTATAGAACCTACGACTACAAGCT
GAGGAATGGTACCATCAACATTGTGTTGACCCCCCCCCCCGGGGTCAATC
ATAAATTCAGAAAATGCCTGACAGATGGATCTCATGGATAAATTTTCTCA
GCTGAGGCTCTTTGCTCTCTGATAACTCTATAAAGCCTAGTTAACATGTA
ACCCATCCAAAACAACTTACCCTCTTGTTAACACTACACACCAATTGTAT
TCCTTTGTTTAGCCCCCTACCCTTTGCCTTTTCTTATTTTTCCCCCCAGT
AACCTCCCATCTACTCCTCATTTATCAATTGGCCTTTCTATTACTCACTT
TAAGTCCTAACACCATTTTATATATTTCACTCTCCTGCGGGAATTTAATG
CCTTTTTACTATAAAACATTTCGTCTTCCTT
NACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACCCAGGGTGAAAAGTG
GTCTGTTGATTTTTAGGCACATGGCAGTGCAGATAGTCCTTGACCCTTCC
TGATAACTCATAGTGCTTTACTCCTTTTCTTCTTCCACTCTGCATCGTGT
TGGGCTTTGAAGCAGATGAAGACAAGAACAGAGTCACAAAGTGAAGTCAA
ATGCTATGATGACAAACTGAAATAAAATTAAAAAAGAGCCACTGCCCGAC
CAATCCCCTTAACTTTGAACCAGAGTATAGCTGAGGAATGCCGAGCCAGC
AGGAATTGGGAAGGTCCAACCTGCTACGAAGTACTGTATGTAAATCATTG
AGCACAGTAGAAAGAGGTGGCCCGGTCAAGGAGCCTTGACGATGGCATTA
CTAACATCACCAAATGAGGATTTGTAGCTGAGGATGCCTGACTATATCCT
ATTTAAGGTGTTTTCTGATGAACCTTCTTTCAGTATTTTCTGTGTTGACC
AGACTACACTCCCGTTTTGCCCCCTTTATTCGCTCTGCTTTTTTCCTCCC
GTTTTTTCTTTTTTTTCTCCATTTGTTTTTTCACCATTTTTCCTACTTTT
TGCCTCTGTGTTCTTTTTACAGTCTTGCCCTTTCCTCCTTCTTTTACTTC
CGCCCTTTCCTTCTCTTTTCCTTTTATATTTATTTTCTACTACGGCATTT
CTTTTTCCCTCCCCTTACTTTCTTTATTTCTTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_p03.g1 MSMg01no456_p03.g1 CHROMAT_FILE:
MSMg01no456_p03.g1 PHD_FILE: MSMg01no456_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:57 2005
         (247 letters)



>mm_chr14_39886796_39887442
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacccagggtgaaaagtggtctgttgatttttaggcacatggcagtgcagatagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacccagggtgaaaagtggtctgttgatttttaggcacatggcagtgcagatagtcct 260

                                                                       
Query: 61  tgacccttcctgataactcatagtgctttactccttttcttcttccactctgcatcgtgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tgacccttcctgataactcatagtgctttactccttttcttcttccactctgcatcatgt 320

                                                                       
Query: 121 tgggctttgaagcagatgaagacaagaacagagtcacaaagtgaagtcaaatgctatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggctttgaagcagatgaagacaagaacagagtcacaaagtgaagtcaaatgctatgat 380

                                                                       
Query: 181 gacaaactgaaataaaattaaaaaagagccactgcccgaccaatccccttaactttgaac 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaaactgaaataaaattaaaatagagccactgcccgaccaatccccttaactttgaac 440

                  
Query: 241 cagagta 247
           |||||||
Sbjct: 441 cagagta 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)