BAC Information

Click to search

BAC

Clone NameMSMg01-457F18
Chromosome14 (Build37)
Map Location 98,036,956 - 98,037,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043366, LOC668654
Downstream geneEG668659, Dach1, LOC635593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F18.T7 (MSMg01no457_f18.b1)MSMg01-457F18.TJ (MSMg01no457_f18.g1)
ACCAG543445AG543446
length804778
length of high quality
(start - end)		412 (73 - 484)45 (88 - 132)
definitionCHROMAT_FILE: MSMg01no457_f18.b1 PHD_FILE: MSMg01no457_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:32 2005CHROMAT_FILE: MSMg01no457_f18.g1 PHD_FILE: MSMg01no457_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACAACTTTCGGAATCAGAAAGGTTTTACTTCCTTGGAAAAT
CTAAATGACCATAGGAAAAATAACATGAAACAAATGCAAAGCATCCCATC
AAATTTTAAATGTAAATGTATGCTCATGTGTGTTTTTAGTAAGAAGAAAT
AGCATTCAGCAACATGCTTCTGGTTTTTATCTGTTCTTCATCATTTTGAT
TGCATATAGACACATATATCTATATTTTATAATAATGTCTCTGGAATAAT
TATGTGTTGGAAAACATTGTACATGTAAAAATATATTATGAAGAATCCTG
CTTAAAAATAGATGTTTAAATTACATAAGCCCTTTTTGAGGTAGAAGATG
AATTTTAGTACCAAACTATTAAATTATTCTATTTGATTATCTGTTGGTAT
TTCAAGTTTTATGTGTTTGAATTCAAGCCTAGCAGCCTTACTATGAAAAT
TTCCATAAGAAACAGAAAACAAATTAANACATTATGCTACTGCAGCTTTC
ATTAAAAAAGGGAAACACAGAATGTTTTATTCTAATTTCGGCATCTTAAA
GGGATATTTTGGGTAAAATTCTACTTCTCGGATTAATATATTTTTATTCC
TAAACCTCATGACCGGGTTTTAATTTTTTTATAAGTTTTTTTTCTCGGGT
GAATATAAATAATTTCCCTATTTTTCAACCTCTTCGTGTGCTGCGGGGGG
CCCTCAAAGGAAACTCTTCATATACCCCCTCCCCCCCGCGCTTTTGTATC
TCAA

GGCGAAATACACTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAAAAAG
CAGGAGTGGGTGGGTAGGGGAGCAGGTTGGGGCCAAGNNTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTTTTTNTTTGGGGGGGGGGNTNTTGGT
GGGGGGGTGGTTTGGGGTGGTGTGTGTGTNTTTTTTTGTTTTTTTGTTGG
TGTGTTTTTTTTNGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGG
GGGGGGGNGGGNGGGGGGGTTGGGGTGGGTTGGGGGGGGNGGGGGGGGGG
GGGGGGNGTTTTCTCCCCCCCCGCGCGGGGGCCGGGGGCGCCTCTCGCCC
CCCTCTTTGTGTTTGCCCCCCCCCCCCCTTTTTTTTCTCCTCCCCTCCTC
CCCTTTCTTTCTTTTCTTCCCCTTCTCTTCTTTGCCCTTTTCTCCCTTTC
CTCTTCTCCGCTCTCTTTTTCCCCCCCCCTTTTTTCTCGTGCCGTGCCTC
TTTTTCCGTCTTTGTTCTCTCCTCCTCCCTTCTTCTCTTTCCCTTTTTCT
CTCTCTTCTCTCCTCCTCTTCTTCCCCGTTTCTCCCCTTGGCCGTGTCGT
CTCCCCCTTCCTTCTTCTTCTCCCCCCCCCGCCCCCCCTTTTTTTTTTTT
CTTTTTCCCTGCCCCCNCTCCCTCCGCGCCTCTCCCGCGCCCTCCTCTTT
TTCCTCCTTCCTCCTCCCGTTCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f18.b1 MSMg01no457_f18.b1 CHROMAT_FILE:
MSMg01no457_f18.b1 PHD_FILE: MSMg01no457_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:32 2005
         (412 letters)



>mm_chr14_98036756_98037567
          Length = 812

 Score =  789 bits (408), Expect = 0.0
 Identities = 411/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaaggttttacttccttggaaaatctaaatgaccataggaaaaataacatgaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tcagaaaggttttacttccttggaaaatctaaatgaccataggaaaaataacatgaaaca 553

                                                                       
Query: 61  aatgcaaagcatcccatcaaattttaaatgtaaatgtatgctcatgtgtgtttttagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aatgcaaagcatcccatcaaattttaaatgtaaatgtatgctcatgtgtgtttttagtaa 493

                                                                       
Query: 121 gaagaaatagcattcagcaacatgcttctggtttttatctgttcttcatcattttgattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaagaaatagcattcagcaacatgcttctggtttttatctgttcttcatcattttgattg 433

                                                                       
Query: 181 catatagacacatatatctatattttataataatgtctctggaataattatgtgttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catatagacacatatatctatattttataataatgtctctggaataattatgtgttggaa 373

                                                                       
Query: 241 aacattgtacatgtaaaaatatattatgaagaatcctgcttaaaaatagatgtttaaatt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aacattgtacatggaaaaatatattatgaagaatcctgcttaaaaatagatgtttaaatt 313

                                                                       
Query: 301 acataagccctttttgaggtagaagatgaattttagtaccaaactattaaattattctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acataagccctttttgaggtagaagatgaattttagtaccaaactattaaattattctat 253

                                                               
Query: 361 ttgattatctgttggtatttcaagttttatgtgtttgaattcaagcctagca 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttgattatctgttggtatttcaagttttatgtgtttgaattcaagcctagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |