BAC Information

Click to search

BAC

Clone NameMSMg01-458A18
Chromosome14 (Build37)
Map Location 73,550,422 - 73,550,908
singlet/doubletsinglet
Overlap geneRcbtb2
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149
Downstream geneRb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458A18.T7 (MSMg01no458_a18.b1)MSMg01-458A18.TJ (MSMg01no458_a18.g1)
ACCAG543968AG543969
length732772
length of high quality
(start - end)		599 (57 - 655)86 (125 - 210)
definitionCHROMAT_FILE: MSMg01no458_a18.b1 PHD_FILE: MSMg01no458_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:31 2005CHROMAT_FILE: MSMg01no458_a18.g1 PHD_FILE: MSMg01no458_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCTTATCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGAAC
CGCGGAATTCACCATGTATACCGAACTCTAGATCCCCTACTCTGCCCCCG
AGTACATAAGCCAGGACATCCAGGCACACAATAAACTCTCATTGTACTCA
TCAACAAAAAAGAATCCCCATGAAATATAAAAGCCAAACAATCACATTTT
TACATGGACAGGAAGATTTTTGCTTGTTTTTGAGACAGGGTCCTTTTGTA
TAGCCCAAGCTGGCCAACAACTAACTCATTATATAGCCCAAGTTGCCTTC
AAACCTTAGAATCTTCCTGAGTCAACCTCCCCAAAGCTATGTTTATAGGC
CTATGCCTCTCACCCAGCAAGAGCTTTCTTAAATAAGACATGGATGCACA
GACCACAAAGAATAGTAGATTTGTGGGGAAATGTAAGCTATGACAGGCAC
AACACGAGAGAAGATGGCTGCAGCATCCAGAACTGACTGCTGCCAAGGGG
CTAAAGATGCTCATATTCATCACAGGATTCATCTGTATCCCCTAGACCCT
CAGAGACTGACAGGGCACAGCACCTAGGGACAGTGGCGTACTTACAGAGG
GGTAAAAGGTACACAAATGATTCAGCCAGTCTGCACTCTGACAAACAGCT
CCACAGTGTTTGAGTCACTGCAACATCATTTGGTTATATATTTATTTATT
TATTTATTTATTTATTTATTTAATGCATATAN

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAACCAAGCTACCTGACATCGGCATG
TTCTTGAATCTTCCCATCATAATGGATGCTCTTTGCGTCTGTGTTCCTTC
GTGATTCCAGCATCGGCTCATCTTCCACACATCTATGAAGTCCCAGGATT
GGCCCCATTGCTCCGATGTGATCTCTGCTGGCTGCCTTCCTTTTATGAAT
TACTTATATACTCGAGGATAGGACTAAGAAAAGCAAAACAAGAATTCTTT
GTGTGCGTTGATGCTACTTTTGTTTATGAGCTCCTAGAGCTAAGAGTCAT
GTGGAGCAAACAGGTTTGATCCCCTGCATAGGGGACCTTTTATTCCTATG
AGATTAATGGAAATTACCATGGCCCATTAATGATAGGGGCTCTGTCAAGA
CTCTCCTTGAAAAACACTCATCCCATAAGACATTCCCAAGACCTACACGT
CTTTTCTGTTACTCTAGTCTCATGTATTATCTATCTTCAAGCCCACATCA
AGATGATGGCCTTGTCTGCATACTGACTTTTGTCTTACTTCCCTATTCTG
ATGTATGTCTATTCTTTCTTTTCATAGATCTACCGTTTTTTTGCCAATTA
TTTCTGCACCATTTGTTTTTTTTTACATATTCATTCATCCTATTTATTTA
CTCTTCTTTCTCTAATTTACTTTATCACATTATCCGTGTCATCATTCTCT
TTTTTCCCACTCTTATTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_a18.b1 MSMg01no458_a18.b1 CHROMAT_FILE:
MSMg01no458_a18.b1 PHD_FILE: MSMg01no458_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:31 2005
         (599 letters)



>mm_chr14_73549910_73550908
          Length = 999

 Score =  911 bits (471), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 113 catgaaatataaaagccaaacaatcacatttttacatggacaggaagatttttgcttgtt 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 catgaaatataaaagccaaacaatcacatttttacatggacaggaagatttttgcttgtt 940

                                                                       
Query: 173 tttgagacagggtccttttgtatagcccaagctggccaacaactaactcattatatagcc 232
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 tttgagacagggtcctttcgtatagcccaagctggccaacaactaactcattatatagcc 880

                                                                       
Query: 233 caagttgccttcaaaccttagaatcttcctgagtcaacctccccaaagctatgtttatag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 caagttgccttcaaaccttagaatcttcctgagtcaacctccccaaagctatgtttatag 820

                                                                       
Query: 293 gcctatgcctctcacccagcaagagctttcttaaataagacatggatgcacagaccacaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gcctatgcctctcacccagcaagagctttcttaaataagacatggatgcacagaccacaa 760

                                                                       
Query: 353 agaatagtagatttgtggggaaatgtaagctatgacaggcacaacacgagagaagatggc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agaatagtagatttgtggggaaatgtaagctatgacaggcacaacacgagagaagatggc 700

                                                                       
Query: 413 tgcagcatccagaactgactgctgccaaggggctaaagatgctcatattcatcacaggat 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgcagcatccagaactgactgctgccaaggggctaaagatgctcatattcatcacaggat 640

                                                                       
Query: 473 tcatctgtatcccctagaccctcagagactgacagggcacagcacctagggacagtggcg 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 639 tcatctgtatcccctagaccctcagagactgacagggcacagcacctagggacagtggca 580

                                                                       
Query: 533 tacttacagaggggtaaaaggtacacaaatgattcagccagtctgcactctgacaaacag 592
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 579 tacttacagaggggtaaaaggcacacaaatgattcagtcagtctgcactctgacaaacag 520

                  
Query: 593 ctccaca 599
           |||||||
Sbjct: 519 ctccaca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |