BAC Information

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BAC

Clone NameMSMg01-458I17
Chromosome14 (Build37)
Map Location 114,937,326 - 115,176,737
singlet/doubletdoublet
Overlap geneLOC100043521
Upstream geneLOC382947, LOC668791, LOC100043821
Downstream geneGpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458I17.T7 (MSMg01no458_i17.b1)MSMg01-458I17.TJ (MSMg01no458_i17.g1)
ACCAG544349AG544350
length725735
length of high quality
(start - end)
249 (83 - 331)305 (325 - 629)
definitionCHROMAT_FILE: MSMg01no458_i17.b1 PHD_FILE: MSMg01no458_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:10 2005CHROMAT_FILE: MSMg01no458_i17.g1 PHD_FILE: MSMg01no458_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,937,326 - 114,937,574)(115,176,433 - 115,176,737)
sequence
TTAAATTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGCA
AATCCGCGGAATTCCTTCAATTTACCAAGAATACAAAACTCCAAAATGCA
TGCAGAGTTTCTGGAGAAAGTTTAGTAAACCATTGTTTAATGACTAAACA
TTATTCATTACACTTGTAAAAAATAAACAATAATTAAAAATTCATTATGT
AAATGAAAATAGAAATAACATTGGATTTTCAATCATTACTTTGAAATCAA
TGAGTAATAATTATGAAAACACAACACTTGGTTAGGATGTAATATATACA
TATATAAGTTTAATCCATATTCGGTGAATTATTTTATGTTTGGCTCTTCT
TTTGGTTCTTATCCTTAGCCTGATTTATATGCAACACATGGAAAATGTCT
GAAATATTTAGTGTGTAATGAATGCCTATAGAAAAAAAATCTCTTAATTT
TAGGAATGGGTTTATGTTGGCAAATTCATGTTCTCATGAATAATAATTCA
ATATCTCCAAATATTTAAAATTGACATCATAACTTTTTATAGCAAAATGA
TTATTACTCTCATAGTTGCGTTTATATTGCTGCACCAAGACACCATGACC
AAAAGGTAAGTAATGTAAGAAAGCGTTCCACTTACACATCCATATTGATG
TCAGCCCAGGAAGTCAGTATAGTAACACAAATGACACAAGAACCTGAAGG
CATAAATTGATTCCAAAACCATGGA
NCCGATGCAGTGGGAGGCCTGGGGGCGCCTGGTTCAAAATTTAGGTGAAC
TATAGAAGTTTCGCGAAATTCATAGTCCTCTTTTAATCCACAAATCCAGC
TGGCATCAGATCCTTTCTTGGTGGTGAACACAGCCCCCAGTTCTGAGTGG
AGAAATGAAAGATGTTTGTCCTGCTTTCTCCCCTTGCTTTCATCACATAG
CATTTTAAGTAAAAAGAGTGCTTGGGACCCCACACATCCCAGTACCTAGA
ATCTACTGTGTAAAGCACCAAATAATTAGTTTATCAGAATTACTTTGAGT
AAAATTTGAAAAGTTTATTTTTAGAAATATATTCTTTTCAATGTTTGGAT
CTTAAGAAAGCAATCAGTATTAGTACAGTGAACCACACATCAGTTTTTGT
GAGGATGGTCAGATGGGTTAAGTTTTATTTATTTCATTTATTTATTATTT
ATTTATCTCTTAAATTATTAGAGCACTCTCTTAAGAACATGGCTTAAGCT
ACTTCTATTGTGTATTCACTGTTCCAGCTCTCTGTGAAATTATCTCCAAC
TTCAGATTTACCTTATGTAAGAAATACATTGCTTCTATACTTACAAGACC
ATAACTTTCATTTGAAATCTCTATAGGAGGCGCAAGGAAGCAGCTTGCAT
TTCCTATCTGGGTGCGGAAGGAAGGAAACAATAATACTTAGGATTCTTTT
TCTGCACTCTCTGGATGATTGCCACATACCTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_i17.b1 MSMg01no458_i17.b1 CHROMAT_FILE:
MSMg01no458_i17.b1 PHD_FILE: MSMg01no458_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:10 2005
         (249 letters)



>mm_chr14_114937126_114937774
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaaactccaaaatgcatgcagagtttctggagaaagtttagtaaaccattgtttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaaactccaaaatgcatgcagagtttctggagaaagtttagtaaaccattgtttaatg 260

                                                                       
Query: 61  actaaacattattcattacacttgtaaaaaataaacaataattaaaaattcattatgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaaacattattcattacacttgtaaaaaataaacaataattaaaaattcattatgtaa 320

                                                                       
Query: 121 atgaaaatagaaataacattggattttcaatcattactttgaaatcaatgagtaataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaaatagaaataacattggattttcaatcattactttgaaatcaatgagtaataatt 380

                                                                       
Query: 181 atgaaaacacaacacttggttaggatgtaatatatacatatataagtttaatccatattc 240
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 381 atgaaaacacaacacttggttaggatgtaacatatacatatataaatttaatccatattc 440

                    
Query: 241 ggtgaatta 249
            ||||||||
Sbjct: 441 agtgaatta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no458_i17.g1 MSMg01no458_i17.g1 CHROMAT_FILE:
MSMg01no458_i17.g1 PHD_FILE: MSMg01no458_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:11 2005
         (305 letters)



>mm_chr14_115176101_115176805
          Length = 705

 Score =  559 bits (289), Expect = e-164
 Identities = 301/305 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatattcttttcaatgtttggatcttaagaaagcaatcagtattagtacagtgaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaatatattcttttcaatgtttggatcttaagaaagcaatcagtattagtacagtgaacc 578

                                                                       
Query: 61  acacatcagtttttgtgaggatggtcagatgggttaagttttatttatttcatttattta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acacatcagtttttgttaggatggtcagatgggttaagttttatttatttcatttattta 518

                                                                       
Query: 121 ttatttatttatctcttaaattattagagcactctcttaagaacatggcttaagctactt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 517 ttatttatttatctcttaaattattagagcattctcttaagaacatggcttaagctactt 458

                                                                       
Query: 181 ctattgtgtattcactgttccagctctctgtgaaattatctccaacttcagatttacctt 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 457 ctattgtgtattcactgttccagctctctctgaaattatctccaacttcagatttacctt 398

                                                                       
Query: 241 atgtaagaaatacattgcttctatacttacaagaccataactttcatttgaaatctctat 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 397 atgtaagaaatacattgcttctatacttacaaaaccataactttcatttgaaatctctat 338

                
Query: 301 aggag 305
           |||||
Sbjct: 337 aggag 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)