BAC Information

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BAC

Clone NameMSMg01-458M09
Chromosome14 (Build37)
Map Location 62,700,198 - 62,700,455
singlet/doubletsinglet
Overlap genenone
Upstream geneSacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
Downstream geneDleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458M09.T7 (MSMg01no458_m09.b1)MSMg01-458M09.TJ (MSMg01no458_m09.g1)
ACCAG544524AG544525
length752750
length of high quality
(start - end)
258 (333 - 590)41 (254 - 294)
definitionCHROMAT_FILE: MSMg01no458_m09.b1 PHD_FILE: MSMg01no458_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:28 2005CHROMAT_FILE: MSMg01no458_m09.g1 PHD_FILE: MSMg01no458_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGAATCTTTCCTCGTGGCCGCTAAANGAATCACTATTTCAATAGCGAGG
GCGGAANNCCNNAGTTTTCTGAAAATAACGNCCTAAGGGCTGCTATTACA
AGACCCACTGTGCCAGGGTTATCAGGCACTAGGAGTCTGCTCAGGGCTTA
TACACACGAGGACACGAGGCAAGCACTCTCTCAATCAAGCAGCATTCCCA
GTTCCTTAAAGTCAAATTTGTTCATCTTACCTTTAGAGTGTTAAGTTTTT
GAAAATGTTTAATACTACATGAGCCAATGTAGCATGTTTTCAGCTCCTAT
TACATTCTGCTAGGTCTGTGGATCNATCATATCTCACTTCCATTCCTAAA
ATGGAAGGTGCCTGAAGACTCAGCCTTGCTTGTTTTAGTATTCTCAATAA
TTATCTGTGCTGCACAAAGGTTCCAACAAGGAGTCTACTAAGATAAGTAA
TCTAAAGGAAGCTTGTATCTAAAATAATGGACATACATATTAAAAATATT
CAGAAATGTATAAGTTAAATCAGAAATGGAAAACTATTTTAAATGTTTAA
ACTCCAGCATAAAATTACATTGTAACTGTAACAAAAATAATTAAAATACC
AAGAATCCATTGCCATTTTCAAGAGTACCAGAATCCCAAGCAAGCATTGG
AAAGCCCCCAAATACTTTTGCTTGGAAGCCAGAGAGAAGACTTAGATGGG
GACCAGCAGCCTCTCGGGGTGCCGCCCTTTGGAGTGTGGAACGGAAAATG
TN
GCGATGAAGNTGGTGGCCTGGGGGCGCCTGTTTCCCACTTGAGGNGAACG
ANAGAAGTTACGNGACCGGCGAGGAAAGNGNGNCNNCNNGNGCNGGGGNA
NCGGGGGCATTTGACCCCGGACNACACGANGCCACAAAGNCAGACAGGAA
GAACTGGNCAGNCGGGGGCCGGCCCCCCGGNANGACAAAGGAAAACGGNG
NGACNAAAGNCACANCNACGCCAGCACCGCGCCCCGAGGCGCGTTTTTTT
TGCTCCCTGTTTCTGTCCAGCGAGCTCCGAGTCCTTCTGCTTGAAGATGT
GCCCATCCTTTTTTTTTTTTNCCGGGAACACCAGGCGGGGGGGCCCCAGC
ATTCTAGGCCCCCCACCCCGAGACACCAAGCCACANCAGACCCACACCAC
CTCGGAACCANGCGCCCATCCCGACGAGGCAGGAGCCAGAGGGACCGAAG
AGACCAGGCCCTAGACCCAGCCCCAGCCCCAACCCCAGCCCCCGACCCAG
ATTTGTTCAGCCTCAGCCATTCCCATTTTCAGCCCTGTCCAGCCTCAGCC
ATTCCTTGACCCATACCTGTCCAGCCTCATCTACTATCAGTTCCTGTCTA
CCTCCTGCCCCTATCACGTCATCTCCCAACCAAGCCATCCCCAACCTTTT
TCTTTTCTTTCCCCCAAATCCCAGCCCTCCCCAGTAATATATTCCCAAAC
CTCCCTTACATCCTCCCCCTTCACTTCGTTACTTTCTACTTCCCCCCATT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_m09.b1 MSMg01no458_m09.b1 CHROMAT_FILE:
MSMg01no458_m09.b1 PHD_FILE: MSMg01no458_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:28 2005
         (258 letters)



>mm_chr14_62699998_62700655
          Length = 658

 Score =  491 bits (254), Expect = e-143
 Identities = 257/258 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacttccattcctaaaatggaaggtgcctgaagactcagccttgcttgttttagtatt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 458 ctcacttccattcctaaaatggaaggtgcctgaagactcagtcttgcttgttttagtatt 399

                                                                       
Query: 61  ctcaataattatctgtgctgcacaaaggttccaacaaggagtctactaagataagtaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctcaataattatctgtgctgcacaaaggttccaacaaggagtctactaagataagtaatc 339

                                                                       
Query: 121 taaaggaagcttgtatctaaaataatggacatacatattaaaaatattcagaaatgtata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 taaaggaagcttgtatctaaaataatggacatacatattaaaaatattcagaaatgtata 279

                                                                       
Query: 181 agttaaatcagaaatggaaaactattttaaatgtttaaactccagcataaaattacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agttaaatcagaaatggaaaactattttaaatgtttaaactccagcataaaattacattg 219

                             
Query: 241 taactgtaacaaaaataa 258
           ||||||||||||||||||
Sbjct: 218 taactgtaacaaaaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)