BAC Information

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BAC

Clone NameMSMg01-458N22
Chromosome14 (Build37)
Map Location 77,373,232 - 77,551,638
singlet/doubletdoublet
Overlap geneLOC100043201, 9030625A04Rik, Ccdc122
Upstream geneGtf2f2, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753
Downstream geneD230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458N22.T7 (MSMg01no458_n22.b1)MSMg01-458N22.TJ (MSMg01no458_n22.g1)
ACCAG544598AG544599
length777785
length of high quality
(start - end)
468 (52 - 519)451 (76 - 526)
definitionCHROMAT_FILE: MSMg01no458_n22.b1 PHD_FILE: MSMg01no458_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:35 2005CHROMAT_FILE: MSMg01no458_n22.g1 PHD_FILE: MSMg01no458_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,373,232 - 77,373,694)(77,551,187 - 77,551,638)
sequence
NNNNAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA
TCCGCGGAATTCTCATGATTTATACAGACACTAAATAACAGATGATCAAC
TACCAGCTTTTATCATGTATTATTCCTGACCACAGAGAACAGCACTTAGA
AGACTCCATTAATTCTCTCAAGCCTGGGAAGGATGCAGTCACTGCCTCAA
CTGCCTGCAGCCACTCCATCTGTCCTCTGCCCTTGTCTGTTCTTCCCAGT
TAGCCTCAAGTTTTACCAACAGTGAGACTTGCAGGAAATCATCTCACCTG
GGAGCAGCTGAACCTGGAAGAAGCAGAGAGACTAGTTAACCAGATTACAG
TTGCCTAAGACTGTTTGACTCTGTTTATGCCTCACACTATCTCCCCCTTT
ATCTTCCTCCTCTAATCCCATGGATATTCCCAAGGCTAAAGATGCTCCTT
CTCCAGTTCCTTTCTACTATAACCAAACTGAATAAATTCCTTTATTATTT
CACAACTCCTCTCTCTGATTAGACTCTCAAGATGCTGAGTGGNCAGCCTG
GTCCATCAGGCACCCCTAGAAGTAAGATTCTGATGTAGTACTGATACAAC
AGGAAATAAAAATTGGCAGATTTGGGGAGGGGCCCCCGAAGAAAACAGAT
TTTTATTTGCTAAAAGCCAAACTCTCTGAACCGGCCTTTGTCCAAAGTCC
AAAATGCCCGAAAGGTCATCCAAAAGGCTTTCCTTTCTGGCTTAACCCAA
AAAAAGAATGGTTGCCCCAAAAGGATN
NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCACAGGACCTAAATTCAAAT
CCCATTTCAACCGGTGACCTGTTCTGTGACCTTGGACTCTTCCCCTACTG
ATGCTGTTGCCAAGCCTACACAAGCTGGCTAGCATCTTCCTCATTGGTTT
GTTAAGACACTTACATGAAGCAACATGAGATGGCTTCCTTGGCACTGTAG
AACGCTGGCTCCACATCAAGTGTGTGGCAGAAACTTGGAAGATAGACGTG
AATGAGAAGCTCCTGCAGCAAGTGTGTCACCTTTAGCAAGACTGTCACTG
AACGGGGTTGATGGATCCCGGGCGTCCTGTCCAAGGATATTTTAAGAACA
CCACCACAACCAAAAGCTGGCAGAAAGTGACACATGCAGGGATCTGGAGA
TTCCATGATTCTAGAGGTGCTGTCATTCTGTAAATTCTGCAACTATTGCA
AAGGTCCGAGCCTTTCTGTTCATATGGNTTTAATTACTGTGGGGTTTTCC
CCTCTACTATACAGATTCTAGTGCCCTGGTGATATTTTAGTCCCAAATTT
AACTATATAAACATTCCTTTTCCAGATTAATATCAATGGTTAAAAGTCCT
TTTCTTAAGAAAAAAAAACTGTTCACTACCCACAGATGTGCTCTCTTTGG
GGAAAAAAAAAAAACCTCCCCAAATTTTTAGGGAAAAAATGGTGAAGCTT
CCCTCTTATGGGCAATCCCGGTCTTTTGTCATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_n22.b1 MSMg01no458_n22.b1 CHROMAT_FILE:
MSMg01no458_n22.b1 PHD_FILE: MSMg01no458_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:35 2005
         (468 letters)



>mm_chr14_77373027_77373894
          Length = 868

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctcatgatttatacagacactaaataacagatgatcaactaccagcttttatcat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcatgatttatacagacactaaataacagatgatcaactaccagcttttatcat 265

                                                                       
Query: 66  gtattattcctgaccacagagaacagcacttagaagactccattaattctctcaagcctg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtattattcctgaccacagagaacagcacttagaagactccattaattctctcaagcctg 325

                                                                       
Query: 126 ggaaggatgcagtcactgcctcaactgcctgcagccactccatctgtcctctgcccttgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaaggatgcagtcactgcctcaactgcctgcagccactccatctgtcctctgcccttgt 385

                                                                       
Query: 186 ctgttcttcccagttagcctcaagttttaccaacagtgagacttgcaggaaatcatctca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgttcttcccagttagcctcaagttttaccaacagtgagacttgcaggaaatcatctca 445

                                                                       
Query: 246 cctgggagcagctgaacctggaagaagcagagagactagttaaccagattacagttgcct 305
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctgggagtagctgaacctggaagaagcagagagactagttaaccagattacagttgcct 505

                                                                       
Query: 306 aagactgtttgactctgtttatgcctcacactatctccccctttatcttcctcctctaat 365
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagactgtttgactctgtgtatgcctcacactatctccccctttatcttcctcctctaat 565

                                                                       
Query: 366 cccatggatattcccaaggctaaagatgctccttctccagttcctttctactataaccaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cccatggatattcccaaggctaaagatgctccttctccagttcctttctactataaccaa 625

                                                      
Query: 426 actgaataaattcctttattatttcacaactcctctctctgat 468
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 actgaataaattcctttattatttcacaactcctctctctgat 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no458_n22.g1 MSMg01no458_n22.g1 CHROMAT_FILE:
MSMg01no458_n22.g1 PHD_FILE: MSMg01no458_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:35 2005
         (451 letters)



>mm_chr14_77550925_77551776
          Length = 852

 Score =  804 bits (416), Expect = 0.0
 Identities = 443/452 (98%), Gaps = 1/452 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgccacaggacctaaattcaaatcccatttcaaccggtgacctgttctgtgaccttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tctgccacaggacctaaattcaaatcccatttcaaccggtgacctgttctgtgaccttgg 655

                                                                       
Query: 61  actctt-cccctactgatgctgttgccaagcctacacaagctggctagcatcttcctcat 119
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 654 actcttccccctactgatgctgttgccaagcctacacaagctggctagcgtcttcctcat 595

                                                                       
Query: 120 tggtttgttaagacacttacatgaagcaacatgagatggcttccttggcactgtagaacg 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tggtttgttaagaaacttacatgaagcaacatgagatggcttccttggcactgtagaacg 535

                                                                       
Query: 180 ctggctccacatcaagtgtgtggcagaaacttggaagatagacgtgaatgagaagctcct 239
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 534 ctggctccacatcaagtgtgtggcagaaacttggaagacggacgtgaatgagaagctcct 475

                                                                       
Query: 240 gcagcaagtgtgtcacctttagcaagactgtcactgaacggggttgatggatcccgggcg 299
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 474 gcagcaagtgtggcacctttagcaagactgtcactgaatggggttgatggatcccgggcg 415

                                                                       
Query: 300 tcctgtccaaggatattttaagaacaccaccacaaccaaaagctggcagaaagtgacaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcctgtccaaggatattttaagaacaccaccacaaccaaaagctggcagaaagtgacaca 355

                                                                       
Query: 360 tgcagggatctggagattccatgattctagaggtgctgtcattctgtaaattctgcaact 419
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgcaggaaactggagattccatgattctagaggtgctgtcattctgtaaattctgcaact 295

                                           
Query: 420 attgcaaaggtccgagcctttctgttcatatg 451
           ||||||||||||||||||||||||||||||||
Sbjct: 294 attgcaaaggtccgagcctttctgttcatatg 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 852
Length adjustment: 10
Effective length of query: 441
Effective length of database: 842
Effective search space:   371322
Effective search space used:   371322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)