BAC Information

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BAC

Clone NameMSMg01-459A03
Chromosome14 (Build37)
Map Location 22,592,332 - 22,592,809
singlet/doubletsinglet
Overlap geneSamd8
Upstream geneCamk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4, EG435391, Dusp13
Downstream geneVdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075, EG435392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459A03.T7 (MSMg01no459_a03.b1)MSMg01-459A03.TJ (MSMg01no459_a03.g1)
ACCAG544704AG544705
length748736
length of high quality
(start - end)
481 (46 - 526)480 (74 - 553)
definitionCHROMAT_FILE: MSMg01no459_a03.b1 PHD_FILE: MSMg01no459_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:45 2005CHROMAT_FILE: MSMg01no459_a03.g1 PHD_FILE: MSMg01no459_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACGTATGCTTTATGTAACTTTTCAGCAGTGCTCCCTGTAGATGG
GTGGTGGATGCTCATTTTCTAAGATTGGGAAAGAAAAATGTGAGTTGATG
ATGTAATGCTGGACATTTTTGTCTTTGGGTAAATTTTCTCATGTCTGTTT
CTTATTTCCTGAATGTTTTTGATGGTAGGAGTGAGCTTACTAGTTAAAAT
GTCCACTTTTGTTCAGTGATGACAGGCCTTAGACAAGCATTTATGTGGGT
AAAGAAGACTAACATCACCTGCCTTTTACTTCCTTAACCTAGAGAAGCCA
AGAAGGTTTTCTGACTCCAGAATGTGTGCTATAAGGCCACAGTGAAGGTT
AAATCAGGAGACCAGAGGATCACCTGATTGGGAGGAGAGGAAAATGATGC
TGTCCTGGGTGTTGTAGAAAACCTTTGTCCTGGGGGATACTCATTTGTAT
TGTTTTGTTTCACTTTTTAAAGCAAGTCCTTTCCCAAACACTATAGTCTA
ATGAACGTTCACAAAAGAAATGTATAACTCATATCTATCCAGAATATTTT
ACTACCCACTGGGTTTTTGTTTTTGTTCTTTCGGCTCTTAACACAAATTA
TATCGTCTCTGTGATCCTTACGTATTCTATAAATATAATCTATCCTTTCT
TTTAATAACCCCCCAATGACAAACCGTCCAGCTTTTTTTATTTCTTTG
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGAAATTTTTCAGCAAATGGATAGAA
CTAGAAAATCTTATCCTTACTGAGGTAACCCAATCACAAAAGAACACACA
TGGTATGCACTCACTGATAAGTGGATACTAGCCCAAAATCTCCAAATAAC
CAGGATACAATTCACAGAGCATATGAAGCTCAATAAGAAGGAAAACCAAA
GTGTAGGTCCTTCTTGAAGGAGAACAAAATACTCACAGGAGCAAATATGG
AGATTAAGTGTAGACAGAGACTAAAGGATAGGCCACCCAGAGACTGTCCC
ACCTGGGAATTCATCCCATATACAGTTATCAAACCCAGACACTATTGTGG
ATGCCAAGAAGTGCATGCTGAAAGGATCCTGATATGACTGTCTCCTGAGA
GGCCCTGCCAGAGCCTTACAAATACAGAGGTAGATGTTAGCAGCCAACCA
TTGGATTGAGCATGGGGTCCCTAATAGAGTAGTTAGAGAGTGACTGAAGG
GTTGAAGGGATTTGCAATCTCCTAGGAAGAACAACAATATTAACCTACCA
GATTTCCCAAAACACCCAGGGACTAAGGCATCCACAAAGAAGTACCCCTG
GCTCCAGCTGTATATGTAGCAGAGGATGGCCTTGTCTCGCATCAATTTGA
AGGAAGGTACCTGGTCCCATGAGGGTCTATAAAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_a03.b1 MSMg01no459_a03.b1 CHROMAT_FILE:
MSMg01no459_a03.b1 PHD_FILE: MSMg01no459_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:45 2005
         (481 letters)



>mm_chr14_22592129_22593009
          Length = 881

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctacgtatgctttatgtaacttttcagcagtgctccctgtagatgggtggtgga 63
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatcctacgtatgctttatgtaacttttcagcagtgctccctgtagatgggtggtgga 263

                                                                       
Query: 64  tgctcattttctaagattgggaaagaaaaatgtgagttgatgatgtaatgctggacattt 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgttcattttctaagattgggaaagaaaaatgtgagttgatgatgtaatgctggacattt 323

                                                                       
Query: 124 ttgtctttgggtaaattttctcatgtctgtttcttatttcctgaatgtttttgatggtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtctttgggtaaattttctcatgtctgtttcttatttcctgaatgtttttgatggtag 383

                                                                       
Query: 184 gagtgagcttactagttaaaatgtccacttttgttcagtgatgacaggccttagacaagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtgagcttactagttaaaatgtccacttttgttcagtgatgacaggccttagacaagc 443

                                                                       
Query: 244 atttatgtgggtaaagaagactaacatcacctgccttttacttccttaacctagagaagc 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttatgtgggtaaagaagagtaacatcacctgccttttacttccttaacctagagaagc 503

                                                                       
Query: 304 caagaaggttttctgactccagaatgtgtgctataaggccacagtgaaggttaaatcagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagaaggttttctgactccagaatgtgtgctataaggccacagtgaaggttaaatcagg 563

                                                                       
Query: 364 agaccagaggatcacctgattgggaggagaggaaaatgatgctgtcctgggtgttgtaga 423
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaccagaggatcatctgattgggaggagaggaaaatgatgctgtcctgggtgttgtaga 623

                                                                     
Query: 424 aaacctttgtcctgggggatactcatttgtattgttttgtttcactttttaaagcaag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaacctttgtcctgggggatactcatttgtattgttttgtttcactttttaaagcaag 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)