BAC Information

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BAC

Clone NameMSMg01-459I18
Chromosome14 (Build37)
Map Location 13,878,589 - 13,878,771
singlet/doubletsinglet
Overlap genenone
Upstream genePtprg, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
Downstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459I18.T7 (MSMg01no459_i18.b1)MSMg01-459I18.TJ (MSMg01no459_i18.g1)
ACCAG545114AG545115
length660615
length of high quality
(start - end)
282 (76 - 357)183 (77 - 259)
definitionCHROMAT_FILE: MSMg01no459_i18.b1 PHD_FILE: MSMg01no459_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:30 2005CHROMAT_FILE: MSMg01no459_i18.g1 PHD_FILE: MSMg01no459_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGGAATTCTTCTGTATCCTGGAGATTCTCCACAGATACTTAAAAGAACA
GCCAAGTTACACTCATACAAGAATTTATCAGGGCCCAAGAAATAGGGGGG
GTTGTGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGCAGAACCCCCT
GGTTCTAGCTTTCACAAGGCTCAAAGGAGTAGCACAAATTGTGACTAGGG
TGTGAAATCCTTAGCTGTCATTAAGCTGACCCTAGGCAGGACTGCTTTAT
CTTTACTGTAAACATTTACCTGGTTCCTGTAAGTCCTTTTGAAGTCATTC
CTTTGTTTTGTGTCAGGTAACTTCAATGTACTTTGCCTGCTGTGACATCC
TTCCCCCTTTATTTTCTGGATTATATAAGACTGGGGGTTCCCTTTGTGAC
AATACATTTCAGGGTTCTACCCCATTCTCCCCGTGTGGCAACTTGGCTGG
GTATTTTCCCCAAATTCCTTTGCGCCATTTTGGAAATCACGAAAACCCCT
CCCCCTACCGCTCAACAAAAGTGGACCCTCCCGGGGGGTTTCTTGGCCGC
TTTTTTTTTTGGGTCCCCCCGTGGGAAACTCTTTCTCTTTATTTTCCTGG
GGGGGGTTGC
TCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGCATGTGTCCACATCAGGGT
TTCTCTTCTCCTGCCACTTGAAGGGCTTTCATCCACAACAATCCAGCTCA
GGAGACATTCCCTCCAGGACACAAACTCCTTTCCTATCCAGACAATGAAG
TGTAGTTCTGTTGGTCTAGACTACCTAAGGAGAGTTTGTGGAATAGTCTT
CATTAACCCCCAGAGGGATTGTCTTATGCAAAATTAGTGGGGAAGGAGCC
TCAACCCTCCTGGTCCAAGTTTTTTATGGGCAAAAACCCCCCCACAATTG
GGGACATTCCAGAAAAAAGATTCTTCGGGAAATTTTGGTTGGGAAGCCAA
AAGTGTTTTTCTCCAAAAAACTCAAAGGGGCCCCGCCAATTTAAAATGGG
TACCGGGGGATTTTATAAGGGCCAAAGATTTTTTTTCTCCCAAAAACCCC
CCTTTTTTGTTATAAGGGGCATTTTTCCAAGGGGGGTGAATTCCCGCGCG
GGAGACTTTTTTTTTTTTTTTTTCCTAAAACGAGGTTTTTATTTCCCCTC
TCCTTTTCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_i18.g1 MSMg01no459_i18.g1 CHROMAT_FILE:
MSMg01no459_i18.g1 PHD_FILE: MSMg01no459_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:30 2005
         (183 letters)



>mm_chr14_13878389_13878971
          Length = 583

 Score =  354 bits (183), Expect = e-102
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgcatgtgtccacatcagggtttctcttctcctgccacttgaagggctttcatccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtgcatgtgtccacatcagggtttctcttctcctgccacttgaagggctttcatccac 260

                                                                       
Query: 61  aacaatccagctcaggagacattccctccaggacacaaactcctttcctatccagacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaatccagctcaggagacattccctccaggacacaaactcctttcctatccagacaat 320

                                                                       
Query: 121 gaagtgtagttctgttggtctagactacctaaggagagtttgtggaatagtcttcattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtgtagttctgttggtctagactacctaaggagagtttgtggaatagtcttcattaa 380

              
Query: 181 ccc 183
           |||
Sbjct: 381 ccc 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)