BAC Information

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BAC

Clone NameMSMg01-459M18
Chromosome14 (Build37)
Map Location 85,714,421 - 85,714,753
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603, LOC100043301, EG629815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459M18.T7 (MSMg01no459_m18.b1)MSMg01-459M18.TJ (MSMg01no459_m18.g1)
ACCAG545305AG545306
length807828
length of high quality
(start - end)
385 (39 - 423)333 (65 - 397)
definitionCHROMAT_FILE: MSMg01no459_m18.b1 PHD_FILE: MSMg01no459_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:51 2005CHROMAT_FILE: MSMg01no459_m18.g1 PHD_FILE: MSMg01no459_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTTCCTCTGAGCCCCATTTTTTAATGGGGTCATTTGATTTTTCTGGA
GTCCACCTTCTTGAGTTCTTTATATATTGGATATTAGTCCCCTATCTGAT
TTAGTGTTGCGCTCACCTTGTCCAGCAAGGAAAAACGCAACAAGTTCGGA
TTCTTCTCAACAGCCTTCTTTATTTCAGGAACACCTCGATGCTACAGGAA
CCTCAGAAACCCAGGGAGGACTCCTTATATACACCCCAGCAGTGGGGAGA
GCTATGTGTCCTCCTGGGATTGGTCAGTCTGCTGGCACTTTGATTTGTAT
GCACCTGCTCGGGAGGGCTTGGCGCCAGATTCGGGCTAGTGCCTGCGCAG
TGGCATTATTTACGGTGATGGTGTATTGGAGGGCGGAGCCATCTTTTATG
CACCTGGGTGCCTACATCTCCCCCTTTTTTTGGTTAATAAATGATGCGGG
ACAATATTTGGTGAAGTCTGTTCATCTACCCTGGTTCCCTGTCTAAGTTG
ACCTTTCCTGCCCAAGCCTTCTTGGTCCACTTTTTTCTACTTCCACCCGA
TTCTCGTCCTAATTGGGCTATTTTTAAAACATATTTCCTCTCCCCTAAAC
CCCTACTTTTCTTTATTCCCCCTTTATAACTTCATCCCCCCTTCTTCTTT
CTTACTTTATTTACCCCCATTCTCTTAATTTATATCTTCCCCCCCTCTTC
TAATAGGCAATACCCCATTCACCACCTCTTTCTCCTATCCCCTTTTTTGT
TCCTTCC
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTCCGGCGAAATTCATTTAGCACTCCGAGAAGATTGAGATATGCTC
TTACCTAAGCCTAAAGGTCACTCCTGTCTTTGTCAGAAACAATTGTGATG
CCTGAGAAGTAACTGTGTCTGATAGCCAGTCTCCACTAACTTTTCAGTCA
GCATTCTCTATATTCCCTAACTTTAGGCAGTCTTGTGGTCTCAGGAGGCC
CCTGGAGTATATCAATTGTGGAAAGTTAATGGAGAGGGCATGTTATCTAA
CTAGCTAACTGCTTTTCTTCATCCATGCAGGGGTGAGGCATTTTGGTAGT
AAAGCTGTTATGAGGTTACCACATGCCTGTAATTCCTCACCCATTCTCTG
ATAGTGACTTGAACAAGCTCAACGTTGTGCAAGTTACACTTCAACGGACG
TGTACTTTGGTCTATCATTGAAATAACTAGACCCTGATTTTTATCTCTGC
ATGAAAAAAATTATATTAAATGCTGTTACTATAAAAACTTTTTTGTCTCC
CCTTCAATTTTTAAGTTCCTCTTTATCTGCATAAAGTCTTCACCTTTCGC
TTTCCTCACTTCTATTTTCTCCTTTTTTTCTAATTTCCCCTCCAGCTTCC
CTCTTCTCCTTACCTCATTGTTATCCTCTTTTTCCCCCCTTTCCCTTTCC
CCCCTCTTTAGTTCTATTTCCGTTCGTCTCCTGTAAGATTTACTTTCTAT
CTTTTCCTCTCTCTTTACTCTCCCCCCCCCCTCCATTTCTCTATTCTCTT
TCCCTCCCCCTCTTCTTCCTCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_m18.g1 MSMg01no459_m18.g1 CHROMAT_FILE:
MSMg01no459_m18.g1 PHD_FILE: MSMg01no459_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:51 2005
         (333 letters)



>mm_chr14_85714221_85714953
          Length = 733

 Score =  613 bits (317), Expect = e-180
 Identities = 329/333 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatttagcactccgagaagattgagatatgctcttacctaagcctaaaggtcactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 attcatttagcactccgagaagattgagatatgctcttacctaagcctaaaggtcactcc 474

                                                                       
Query: 61  tgtctttgtcagaaacaattgtgatgcctgagaagtaactgtgtctgatagccagtctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtctttgtcagaaacaattgtgatgcctgagaagtaactgtgtctgatagccagtctcc 414

                                                                       
Query: 121 actaacttttcagtcagcattctctatattccctaactttaggcagtcttgtggtctcag 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 accaacttttcagtcagcattctctatattccctaactttaggcagtcttgtggtctcag 354

                                                                       
Query: 181 gaggcccctggagtatatcaattgtggaaagttaatggagagggcatgttatctaactag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaggcccctggagtatatcaattgtggaaagttaatggagagggcatgttatctaactag 294

                                                                       
Query: 241 ctaactgcttttcttcatccatgcaggggtgaggcattttggtagtaaagctgttatgag 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctaactgcaagtcttcatccatgcaggggtgaggcattttggtagtaaagctgttatgag 234

                                            
Query: 301 gttaccacatgcctgtaattcctcacccattct 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gttaccacatgcctgtaattcctcacccattct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)