BAC Information

Click to search

BAC

Clone NameMSMg01-459N17
Chromosome14 (Build37)
Map Location 56,423,358 - 56,423,697
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3
Downstream geneNfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459N17.T7 (MSMg01no459_n17.b1)MSMg01-459N17.TJ (MSMg01no459_n17.g1)
ACCAG545351AG545352
length782817
length of high quality
(start - end)		473 (41 - 513)347 (71 - 417)
definitionCHROMAT_FILE: MSMg01no459_n17.b1 PHD_FILE: MSMg01no459_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:56 2005CHROMAT_FILE: MSMg01no459_n17.g1 PHD_FILE: MSMg01no459_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAATGTACACTCTGAAAGCCAGAAGTCCTAAATAGATGTTCTACAAGCT
CTAAGAGACCAGATAAGCAAATCCAGGCAATTATACCCAACAAAACTATC
TATCACAATTGATGGAGAAAGAAAAACATACCATAATGAAAATAAAACTA
AGCAATTTCTATCCACCAATCCAGCTTTATGGAAGGCAGTAGAAGTAAAA
TTTCAATCAGAAGGGGTCAACCACACTCAAGAAAAAACAAGGAATGATAA
ACAATACTAGTGACACCATCTCCAGGCCACCTTGGGCACGAACTGGGCAG
ACAGTCCCATAGTCTTGAGAGGACTCTTCACTCCCCAGATGCCCTAACAC
ACGCAGGATCTTAGGATCACTGGTAAGTAGAGCACAACATCTGCTCCAAC
ACCACCAGGAGTGCCTGGTACTAGCAGGAGCAGGGACACAAGAACACCTC
CCAACCAGTGGCTTGGGTTTCTTCAAGTCGGCACTGGCCTACCTTAGTTT
AAACTCATTGGATGGCCCCCTGACCCTGAGAGAGGGACCACTTTCAGTGC
TTCTATACCCCCAGGATCTTAGATCCCAGAATCCCGGAGTTTGACTTACC
AGAAATTCCGGTTTCTAAGAAACTTGTATGCTTAAATCTTGACCCCCCAA
TCTCCGGACCCGGGTTTCCGAAACCAAAACCCAAAAAACGGGGCCCGGTA
AACCTTACTCATGGGATTCTAAAAAACAACTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTGGTCTTCATAATAAGCTCT
TGTCAGAGAGTGGGCTGAGTGAGGAGAGTGGACATGGGGTTAAGTAATCA
AGTCAAATCCATATATAGACAGACAGATGACGGTTTGGAACCCAGATTTG
TTTTCTGTGTTTTGGGGGTGAATTTTAATCAGGAAACCTGAAGAGGTACC
ATTCTTTTTTTTTTTTTTTTGTATAATTTTTTCTTTTTTTAAAATATTTT
TTATTATTATGTATTTTTTTCAATTACATTTAGAATGCTACCCCAAAAGT
CCCCCATACCCTCCCCCCCACTTCCCTACCCACGATTCCCATTTATTGGC
CCTGGCATTCCCCTGTACTGGGGCATATAAATGTTGCAAGTCCAATGGTG
CTTCTCTTTCCAGCGATGGGCGAATATGGCATCTTTTGATACATTTGCAA
CTCTAGCCAAAATTCCCCCGGTACTGGCTCATTTCCTAAGTTTCGTTTCC
CTTTCCGGGTCGGTTAAATCTTTTTACCTCCTCGGGTCATCTCCTCCTGA
TCTTTCATTTGTTGTGCTTTGGATTCTTTCCCCTCCCTTCTTTTCCTTCC
TTTATTTTGTTTTTTTCTAGCTCCTCTCTTCCTTCTTTCATGTACTTACC
CCCCCCCTTCTTTATCTTTACTCCCTTTTTCTATTTATTTGCTTCTTTCC
CTTTCCACGATTAACCCCTCCGCCCCCTCCTGTTCCTATTTCCCTCCTTT
TTTCCTTCTTTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_n17.g1 MSMg01no459_n17.g1 CHROMAT_FILE:
MSMg01no459_n17.g1 PHD_FILE: MSMg01no459_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:56 2005
         (347 letters)



>mm_chr14_56423158_56423904
          Length = 747

 Score =  580 bits (300), Expect = e-170
 Identities = 333/348 (95%), Gaps = 9/348 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagcctggtcttcataataagctcttgtcagagagtgggctgagtgaggagagtg 60
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 201 caggccagcctggtcttcatactaagctcttgtcagagagtgggctgaatgaggagagtg 260

                                                                       
Query: 61  gacatggggttaagtaatcaagtcaaatccatatatagacagacagatgacggtttggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gacatggggttaagtaatcaagtcaaatccatatatagacagacagatgacagtttggaa 320

                                                                       
Query: 121 cccagatttgttttctgtgttttgggggtgaattttaatcaggaaacctgaagaggtacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagatttgttttctgtgttttgggggtgaattttaatcaggaaacctgaagaggtacc 380

                                                                       
Query: 181 attcttttttttttttttttgtataattttttctttttttaaaatattttttattattat 240
           |||||||||||||       ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 attcttttttttt-------gtataattttttctttttttaaaatattttt-attattat 432

                                                                       
Query: 241 gtatttttttcaattacatttagaatgctaccccaaaagtcccccataccctccccccca 300
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 433 gtatttttctcaattacatttagaatgctatcccaaaagtcccccataccctccccccca 492

                                                           
Query: 301 cttccctacccacg-attcccatttattggccctggcattcccctgta 347
           |||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 493 cttccctacccacccattcccatttattggccctggcattcccctgta 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |