BAC Information

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BAC

Clone NameMSMg01-460J06
Chromosome14 (Build37)
Map Location 13,012,417 - 13,012,904
singlet/doubletsinglet
Overlap genePtprg
Upstream geneLOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, LOC100042441
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026, EG328354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460J06.T7 (MSMg01no460_j06.b1)MSMg01-460J06.TJ (MSMg01no460_j06.g1)
ACCAG545902AG545903
length730724
length of high quality
(start - end)
492 (39 - 530)497 (71 - 567)
definitionCHROMAT_FILE: MSMg01no460_j06.b1 PHD_FILE: MSMg01no460_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:52 2005CHROMAT_FILE: MSMg01no460_j06.g1 PHD_FILE: MSMg01no460_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
AATATTCTGAAAAAGTCTAACCTGAAGAGTTTTATATGAAACAATTAGAA
GTTGTGCATATAGTCCTAATTACTGCACTTGAACCTCTTGAGAATATTTA
TATAAGACTTATCTCACATGTAAACTGTTTAAAATTCATAATCTTTTAAT
ACTAAATCATTAAGTAGGGTAGTTAATTAATGTTGTAAGTAGTTCCTTTT
TACTTTCAGTAAACCAACTTATACAATTTATATCTAACCTTTTCCATGGA
ATGGCTTGTCTCTGTTATCTGATTATTGAGATGAAATTTCACTTATATCC
CCAGGAAACAGTTTTGATTCATGAGGAGTGATCTTGACAGGGTAATGAGG
AAGGTCATGGCTGGCCCATTCTTACGCTGTACAGTTCTGGCCGTGTGCAT
GGCTCACTGACTGGTGATGTCATTTTTTCCTTTCTAGGATCTTTTTTTTT
TTTTTTTTAAACCTGTTGAAGTTTTCGATTCCTAGTATACTTTCAAAACA
GCTTTTCAAATATGGGACTAGAAACCTCTCTTTATTGTTTTAAACCTAAA
GCTCTTCTCTGAAAGGGGTCTGTGAACATTCCTGTGAAACATTTCTTATG
CCCCATCCATGGAAGAAATTTTCTTTCTTGCAGNACTTTAAAGGACCCGC
CATGACTTCCTGGTCCCACCCTAAAGGAAA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGCCTGTACCAACTTGGCCAAAAATTGGC
ATCTGGCTAGGATATAGACCCTATGGAAGAGACTGATACTGTTACTCTAC
TGAGTGGACAAAATATTAAACATTCCCCCTAAGTTCTTGTCTTTATACCC
ACAGCTCAGTGTGCACCATAGAATCTTCCTTTTGCAGTAGATGGCAATTA
GAACAAAGACTCAGAACTGACCAACAAGCAGAGAATAAGAAATGGTGGCA
TGCACCTCTAAAGGAGATGTGTTCCATCCTGTGGAGTTTGAATGAGAATC
ACCCTCATAGGCTCATATATTTGAATAGTTAGTCCCCAAGTTGGAGAACT
GTTTGGGAAGGATTGGGAGTTGTAACCTTGTTTGAGAGAGGTGTGTTACT
GGCAGCAGACATTGTGGTTTTGAAAGACTAGCACAATTTCCTGTGTGCCC
TCTCGGCCTCCTACTTATGAAGCTAATGTGAGCTTTCAGCTGCTGTTCCT
GCACCATTACTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGGC
TGCCTGCCTGCCTGCCTGCCTGCCTGCCTTGCTGCCTGCCATGCTCCCTG
GCATGGATGGAAGAACTTCTAACCCTCTTGGAATGTAAAAATGGCCAGGA
AAATCCTTCCTTCCAAAAATTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_j06.b1 MSMg01no460_j06.b1 CHROMAT_FILE:
MSMg01no460_j06.b1 PHD_FILE: MSMg01no460_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:52 2005
         (492 letters)



>mm_chr14_13012213_13013104
          Length = 892

 Score =  944 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaatattctgaaaaagtctaacctgaagagttttatatgaaacaattagaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatattctgaaaaagtctaacctgaagagttttatatgaaacaattagaagt 264

                                                                       
Query: 65  tgtgcatatagtcctaattactgcacttgaacctcttgagaatatttatataagacttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgcatatagtcctaattactgcacttgaacctcttgagaatatttatataagacttat 324

                                                                       
Query: 125 ctcacatgtaaactgtttaaaattcataatcttttaatactaaatcattaagtagggtag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcacatgtaaactgtttaaaattcataatcttttaatactaaatcattaagtagggtag 384

                                                                       
Query: 185 ttaattaatgttgtaagtagttcctttttactttcagtaaaccaacttatacaatttata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaattaatgttgtaagtagttcctttttactttcagtaaaccaacttatacaatttata 444

                                                                       
Query: 245 tctaaccttttccatggaatggcttgtctctgttatctgattattgagatgaaatttcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaaccttttccatggaatggcttgtctctgttatctgattattgagatgaaatttcac 504

                                                                       
Query: 305 ttatatccccaggaaacagttttgattcatgaggagtgatcttgacagggtaatgaggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatatccccaggaaacagttttgattcatgaggagtgatcttgacagggtaatgaggaa 564

                                                                       
Query: 365 ggtcatggctggcccattcttacgctgtacagttctggccgtgtgcatggctcactgact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtcatggctggcccattcttacgctgtacagttctggccgtgtgcatggctcactgact 624

                                                                       
Query: 425 ggtgatgtcattttttcctttctaggatctttttttttttttttttaaacctgttgaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtgatgtcattttttcctttctaggatctttttttttttttttttaaacctgttgaagt 684

                   
Query: 485 tttcgatt 492
           ||||||||
Sbjct: 685 tttcgatt 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)