BAC Information

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BAC

Clone NameMSMg01-460M23
Chromosome14 (Build37)
Map Location 91,672,541 - 91,672,819
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043336, EG639558
Downstream geneEG665377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460M23.T7 (MSMg01no460_m23.b1)MSMg01-460M23.TJ (MSMg01no460_m23.g1)
ACCAG546079AG546080
length742774
length of high quality
(start - end)
281 (61 - 341)85 (73 - 157)
definitionCHROMAT_FILE: MSMg01no460_m23.b1 PHD_FILE: MSMg01no460_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:10 2005CHROMAT_FILE: MSMg01no460_m23.g1 PHD_FILE: MSMg01no460_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGGATGAGCAGGAAGAAGGAGTAACATGATGTTCCTAAATCTGCCATTCC
ATGAAAGATTGATTACAGCAAGCATCTTTACATATGAGGAGATGTTTCAG
GAGTTTAGAGTACTTTATTTTTCTTTCAGAGGACACAGGGTTTTTGTTGT
TGTTGTTGTTGGTTGTTGTTGTTGTTATTTTTAATTTATTTATGTTACAT
TCCAATTTACAACTTCTACTCTCTTCTTTCCTCATACTCACTCCCTCTCA
CCTCACTGTTTCCTATTCCCTCCTCCTCCCTTTTTCTTCTTAACCTTATT
GATTTACCACCCCCCATCTTTGTCCCCACAATACCACCTACATAATCTCC
TAAACCGTTCCCCCACTTCCCTACTCACACTGCACTGCCTCATTCACTAC
CTCCCTTGCGTCGCATCCTACTCCCCCTTATATCGCTCCTCCCCCGTTTC
TCCTTTTTTTTTCTTCCCGTATACTCGGTTATCTCCTGCCTCCCATATTT
CTTTTTTATTTTCCCTTCCCCTTTCTCTTTAATTTACCTCCGCCCCCGTT
CCTCCCCCTATTACCGCTCCTTCCCCTTTCTTACTCCTCTCCTTTTTTTA
CCCTTCCCCTCTTCTCTATTTACTCTCCCCCTTCTATTTCTCTTTTTCAT
TTATTTTCTTCCCTCCCCTCTTATCTCACTTTACCTATCCAT
AAAGGGTAGCCGGGCGGCCGCTGTTCGCGAATTTAGTTCAAGTATAGAGG
GGCCGTGCTACTTCTCATGGACACAGCACAATGAGGCTTGTTGTTCTTTT
GTTTCCTTATTGTCTGTGGCTGTTAACCAACATGTGGTATCTTGCCAACC
TTCTGGNGATCTTTCTTAACCAAAATTANGATTCCTGTTGAACAATTTGT
TTGACAAGAANGNTTAAAAATTTGTTATGTTTCTGGCTGCAATCCCAAAA
ACATTAAAAGGCGAAAAAAACAGGGGAATTTTGAAAACCCCTGGGGCTTG
TAAAGGGAATGAAAAAGGCAAATTCTGTTTTGAACTCCCCAGGGAAAATT
TTTTTTAGAATTAAAAAAAAAGGTTAAATTTTTTTGAACCTGGGGGGGGG
TTTTAAAAAAAAAAAAAAAAAACCCCCCCCCAAAAAAAAAAAANNTTTTC
CCCCCAGAAAACACCCCCCAAAAAATTTGGGAAAAAATAAATCCTTTTTT
GTGGGGGAATTTTTTTTTTCCCCCCAAAAAAAAAAAAACCCCNCCCACCC
CCCCTCCCCCCCCCCCCGCCTNCTCCCCTCCCCCCCAGNNCNCCCCCCCC
ACAACCCCCCNCCCCTCCCCCCCCCCNNATNNNCNNCTANCCCCCCCCCC
CCATCTCCCCCCTCCCCCCCCCCCNCCCACAACCCCCNNCCNCCCCCCCC
CCCCTCCCATCCCCCCCNCCNCNNCCCCCCCCCCNCCCNCCCCCCCCCCC
TAACTTATTTTTTATTTTTAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_m23.b1 MSMg01no460_m23.b1 CHROMAT_FILE:
MSMg01no460_m23.b1 PHD_FILE: MSMg01no460_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:10 2005
         (281 letters)



>mm_chr14_91672172_91672852
          Length = 681

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaagaaggagtaacatgatgttcctaaatctgccattccatgaaagattgattacagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggaagaaggagtaacatgatgttcctaaatctgccattccatgaaagattgattacagca 589

                                                                       
Query: 61  agcatctttacatatgaggagatgtttcaggagtttagagtactttatttttctttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agcatctttacatatgaggagatgtttcaggagtttagagtactttatttttctttcaga 529

                                                                       
Query: 121 ggacacagggtttttgttgttgttgttgttggttgttgttgttgttatttttaatttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ggacacagggtttttgttgttgttgttgttggttgttgttgttgttatttttaatttatt 469

                                                                       
Query: 181 tatgttacattccaatttacaacttctactctcttctttcctcatactcactccctctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tatgttacattccaatttacaacttctactctcttctttcctcatactcactccctctca 409

                                                  
Query: 241 cctcactgtttcctattccctcctcctccctttttcttc 279
           |||||||||  ||||||||||||||||||||||||||||
Sbjct: 408 cctcactgtcccctattccctcctcctccctttttcttc 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)