Query= MSMg01no460_p16.b1 MSMg01no460_p16.b1 CHROMAT_FILE:
MSMg01no460_p16.b1 PHD_FILE: MSMg01no460_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:24 2005
(536 letters)
>mm_chr14_123316382_123317317
Length = 936
Score = 924 bits (478), Expect = 0.0
Identities = 515/532 (96%), Gaps = 8/532 (1%)
Strand = Plus / Minus
Query: 5 gaattcccccttatagccactggtctaaagctcacatcataaagctaaagaaactgaaag 64
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaattcccccagatagccactggtctaaagctcacatcataaagctaaagaaactgaaag 808
Query: 65 gaaagcagcatcagtggcagccacatagtagatggactcaacagccaggtgcaaaggcaa 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 807 gaaagcagcatcagtggcagccacatggtagatggactcaacagccaggtgcaaaggcaa 748
Query: 125 gcaagtgggaaaaaaaaataaaaaaaatgttaacttttgcagttccttgcacctgggctg 184
|||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gcaagtaggaa--------aaaaaaaatgttaacttttgcagttccttgcacctgggctg 696
Query: 185 cggcaggaccatgaggcccacgtttaagatgggtcttctctcagctgtgttgctgtaagt 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 695 tggcaggaccatgaggcccatgtttaagatgggtcttctctcagctgtgttgctctaagt 636
Query: 245 tttctacttggtcactcagatttgtttgtgctttcatgcatgcttaagttcttttaggtt 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 635 tttctacttggtcactcagatttgtttgcgctttcatgcatgcttaagttcttttaggtt 576
Query: 305 tcatcccattaggcccagccacacatccctgcatagggctttctggttttgagtctcata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcatcccattaggcccagccacacatccctgcatagggctttctggttttgagtctcata 516
Query: 365 ttacctagtgtgttcattgcatatggtttcaaattactgacttgaaggtatatatagaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttacctagtgtgttcattgcatatggtttcaaattactgacttgaaggtatatatagaag 456
Query: 425 attaagcacagcatcaaaactttggacatctgtacctatattcttgatcaacctgcttgg 484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 455 attaagcacagcatcaaaactttggacatctgtgcctatattcttgatcaacctgcttgg 396
Query: 485 acccagatagacacatcttgatactcctgctgtaacatcctaggtaatttgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 acccagatagacacatcttgatactcctgctgtaacatcctaggtaatttgt 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_p16.g1 MSMg01no460_p16.g1 CHROMAT_FILE:
MSMg01no460_p16.g1 PHD_FILE: MSMg01no460_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:24 2005
(571 letters)
>mm_chr14_123191110_123192080
Length = 971
Score = 1073 bits (555), Expect = 0.0
Identities = 567/571 (99%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgtatcccatttttaaatagggttatttgtttctctggagtctaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgtatcccatttttaaatagggttatttgtttctctggagtctaactt 260
Query: 61 cttgagttctttgtatatattggatattagcccactatcagatttaggatttttaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttgtatatattggatattagcccactatcagatttaggatttttaaagat 320
Query: 121 ctttgactttctctggcacatgccccaggaagttagtattgtaatttgagaagttcatcc 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctttgactttctctagcacatgccccaggaagttagtattgtaatttgagaagctcatcc 380
Query: 181 cccaaccccaatggcttcctattagcagttaccttgaacacaagagttgatagcatgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaaccccaatggcttcctattagcagttaccttgaacacaagagttgatagcatgttc 440
Query: 241 tttgtaatccgtgacctctatttaaagtagaaacccatggagctaagcctccatgggcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtaatccgtgacctctatttaaagtagaaacccatggagctaagcctccatgggcac 500
Query: 301 ttcatactgaggccagaggctcctggaaaaccaaacactaaacaaaaccacaggaaaata 360
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcatactgaggtcagaggctcctggaaaaccaaacactaaacaaaaccacaggaaaatg 560
Query: 361 tggctcttacatatgaataggaattttcaatctctcatagcatcaaatgctggtttttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggctcttacatatgaataggaattttcaatctctcatagcatcaaatgctggtttttaa 620
Query: 421 actcaattttatgtagaaaaccaaagaatcacatctgttttatgtttcatctatacctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcaattttatgtagaaaaccaaagaatcacatctgttttatgtttcatctatacctgt 680
Query: 481 ctctattaagagactgtgagtcagaggactcagactctgaaatagatatctgaggactga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctattaagagactgtgagtcagaggactcagactctgaaatagatatctgaggactga 740
Query: 541 ttagtctctaagattgttgtgttatctctgt 571
|||||||||||||||||||||||||||||||
Sbjct: 741 ttagtctctaagattgttgtgttatctctgt 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
