BAC Information

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BAC

Clone NameMSMg01-461F07
Chromosome14 (Build37)
Map Location 90,033,783 - 90,034,185
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F07.T7 (MSMg01no461_f07.b1)MSMg01-461F07.TJ (MSMg01no461_f07.g1)
ACCAG546479AG546480
length828753
length of high quality
(start - end)
204 (53 - 256)404 (80 - 483)
definitionCHROMAT_FILE: MSMg01no461_f07.b1 PHD_FILE: MSMg01no461_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:53 2005CHROMAT_FILE: MSMg01no461_f07.g1 PHD_FILE: MSMg01no461_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACTTTAAACTTTGTGGCCGCTTATAGACTCACTATTTCCAGAGGATCC
GCGGAATTCTTTGTTCTCCCCTGACCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTATGTCTCATTTGCCAATACTTGATCTTACTACACTTGTCTTTGCCG
TTCTGTTCACGAACTTTCCCTCTTGTGCCCATATCTTCTTGGCTTTTCCC
CACTTTTTCTTCTATTAGCTCCATTGCCTTTGGTTATATTTGAAGCTTTT
TGATTTTTTTTATACTCTTCCTCATTCCTTTTGTTTCTTCTTATGTTTCT
TTCTTTTTTTTCTTCTCTTTTGATTCCTATCTTTTCTTCGTCGCTTTTTC
CCTTTTTTTTTTTTCTATTTTCGTATCTTTCTTTCTCTTTTTTTTTTTTT
CCCCTTGCTCTCTTTTTTTCTCCCAATTTTTATTCCTCCTCATTTTTTTT
TTTCTTTTTTGCTTTTCTACTCCTTTGCGAGATTATATTCTCTTTATTTT
TTTGCTTCCTTTACCATTTATTTTTTTCCCTCGTCCCCCTGTCTTGTTAT
ATTTCACTCTCTATCATTCTTCCTCTCCTCCTCTCTTTTCTCTTCAATTA
TCTGCCGATTATTCTCATTCTTATCTTCACTCTCTTCTTCTCACCCNTTC
TCTTCTTTCTCCTTTCCTGCTTCTCTTT
CCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGCAAATGTTTGTCTGA
ATATTTGAAAAATATAGTTGATTTTATTTGTATCTTTTAAAAGGAAATTT
TGGTAAAGTGCTTTATAAGTCTCATAGCCATTGGAATTTGAACTTTTAAG
ATATCGTGCCTTTGTGTTTCTCATGATATCTTTATTCTGATGTGGAAATG
GTGGTGAGCATAATCTAGTAATCTTACTAAGTTTGATGAACTTATTGTTA
TAATAGTCAAAACAATTATTATTTTTATAACCAGAAAACAATCAGCTATT
TATTTGTTCAATCACAGTTTTTATATCATCTTTCCTTCTGAAATTCCCTG
GCTGTTAGAAGAAAAAAAGTAAAAGAAAGAAAGAAAGAAAAAAAAAGTAG
ATAGCTGACTCCCTATTAATCAATTTGCATTTTCTTTTAGATTGGNCTTC
ATTCTTGCCCACTTGCTATCTATACCCTGACAAACCCAGCAGGGAGATAA
ATTTCCGTTTACAAGCTGACTGCCTGATTTTGCCCCCGTTTGTTTTCTAA
TTTGCTTACTCGTAACAAATCATGGAAACCTCGTTTTTTGTTTCTTTTTC
CCCCTGTTTTTTTTTTTCCTCCACCCTGGTTTAATCCTTCCCTTCTCTTC
CTTCTCTATTACCACCTCTCTTTCCATTCTTTTCCACCCTTCAGTTTCCT
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f07.g1 MSMg01no461_f07.g1 CHROMAT_FILE:
MSMg01no461_f07.g1 PHD_FILE: MSMg01no461_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:54 2005
         (404 letters)



>mm_chr14_90033645_90034447
          Length = 803

 Score =  739 bits (382), Expect = 0.0
 Identities = 398/408 (97%), Gaps = 9/408 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatgcaaatgtttgtctgaatatttgaaaaatatagttgattttatttgtatctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttatgcaaatgtttgtctgaatatttgaaaaatatagttgattttatttgtatctttta 482

                                                                       
Query: 61  aaaggaaattttggtaaagtgctttataagtctcatagccattggaatttgaacttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaggaaattttggtaaagtgctttataagtctcatagccattggaatttgaacttttaa 422

                                                                       
Query: 121 gatatcgtgcctttgtgtttctcatgatatctttattctgatgtggaaatggtggtgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatatcgtgcctttgtgtttctcatgatatctttattctgatgtggaaatggtggtgagc 362

                                                                       
Query: 181 ataatctagtaatcttactaagtttgatgaacttattgttataatagtcaaaacaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ataatctagtaatcttactaagtttgatgaacttattgttataatagtcaaaacaattat 302

                                                                       
Query: 241 ta----tttttataaccagaaaacaatcagctatttatttgttcaatcacagtttttata 296
           ||         | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaccg-----agaaccagaaaacaatcagctatttatttgttcaatcacagtttttata 247

                                                                       
Query: 297 tcatctttccttctgaaattccctggctgttagaagaaaaaaagtaaaagaaagaaagaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcatctttccttctgaaattccctggctgttagaagaaaaaaagtaaaagaaagaaagaa 187

                                                           
Query: 357 agaaaaaaaaagtagatagctgactccctattaatcaatttgcatttt 404
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agaaaaaaaaagtagatagctgactccctattaatcaatttgcatttt 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 803
Length adjustment: 9
Effective length of query: 395
Effective length of database: 794
Effective search space:   313630
Effective search space used:   313630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)