BAC Information

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BAC

Clone NameMSMg01-462P24
Chromosome14 (Build37)
Map Location 28,195,721 - 28,195,847
singlet/doubletsinglet
Overlap geneArhgef3
Upstream gene4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, LOC100040147
Downstream geneCcdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462P24.T7 (MSMg01no462_p24.b1)MSMg01-462P24.TJ (MSMg01no462_p24.g1)
ACCAG547755AG547756
length802855
length of high quality
(start - end)
276 (84 - 359)127 (82 - 208)
definitionCHROMAT_FILE: MSMg01no462_p24.b1 PHD_FILE: MSMg01no462_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:12 2005CHROMAT_FILE: MSMg01no462_p24.g1 PHD_FILE: MSMg01no462_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCTTTCTTCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGA
TCCGCGGAATTCCAGAGCCTCCCCCATCATGCACGGGGCCTGCACAGGTC
TGCACCAGGTCCTCTGCACATAAATTATGGTTCCCAGCTTAGCGCTTTCA
TGAGAGTCCTGAGTGTGGGAACGAGTGGGTCTCTGATTCGTGTGCCTTCT
CTTGGGCTCTTTTCCTTCTGTTTATTTGTCTTGTCCAACTGTAAAGTGAC
AGTTTTTGTTTTATATTATTATATTTTATTATTATCCTTAGAAGCCTGTT
TTCTAATGAGAGACAGAAGAGAAGTATTATCTGGATGGGAGGGTGGGAGA
GGAATCAGGAGGAGTATTTTTATTTCTTCTTCTTTTTCTTTTCTCCTTCT
TCCCTTCTCCTTTTCTTCTTCTCTCTCCCCCCCTCCTTTCTCTTATTCTT
TTTCCTTCTCTTTCTTTTTTTTTTCTCTCTTTTTTTTTCTCTTTTCTTTT
TTCTTTTTTCTTCTTTCTTTTCCTGCTTTCTCTCTTTCCCTTACCTCCTT
TCCTCATATCCTTTTTCCTCTCTCCTTTCCCCCCTCTTCCCTTCCCCCCT
TTTTTCCTTCCTTCCCTTTTATTTCCTCTTTTATTTCTTCTTGTCCTTCT
TACTTTTTCTCTCTCTCTATCCTTTTCTTCTCCTTTTTCCCCCTTTCTCT
CTCCTCTTTTTTTCTTCTTTATTACTCTCTTTCTTCTTCCTTTCTTGTTC
TTTTCCTTCTCTTCGCTATTTTTTCTCTCTCTTACCTTCTCCTCTTCCTT
TG
CTATCCTTTCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTGCAGTGCAGAGG
AAAGTACTCATGGCGGGTGGTAGAAGTGACCTGTGTTGTGAAAATGGAGG
AGGAAAAACAGAATTAGGGGGTGGAGAGAGGAGAGTGAGATGAAGAAGGT
AAAGAAGACAAGGAAGAGAAGGAAGGAGAAATTGAGTTTGTAGCCTCTAT
ATCTCTCGTTTATCTCTTTATGTTATTGCGGGTGATTTAATATTCCCTCT
ACGCTTTCTCTGTATTTCTTCCTTACGTTTGTTTTTTTTTCTCTTTCTTC
CTCTTTCTTTTTCTGATCTGCGTTTTTTTTTTTTCTATTTTTTATGCCCT
CATCTTTTCTCTCTTCTATTCTTTCCGTTCTCCTTCTTCTTTCTCGCTAT
TCTTACTCTTTGCCTTCTTCTTCTTTTCTCTCTTCTCCCCTTACTCTCCC
TCTTTCTCTTGCAGGTATTTTCCATTGCTCTTTCCCCCTCCTCCTTTCGT
TTGCCTTTCGTTCCTCTTTCCTTTTTTTTCCCTCCTTTCTTCTTTTTCTT
TTCCCTCTCTTCTCTTCCCTTATATTTTTATCTCCTTTTACTTTCTTCTT
TCCTCTCTTTTTTCGCTTCTTTCCCGTCTCATCACTCTCTCTTCCTCTCG
CTTCTTTATTTTTCCCCCCCCTTCCTTTTTCCCTTTTTTCTTTTTTCTGC
ACCCCTACTCCCCTTCTCTCTATTTCTCTGTTTACTCCGTCATCCTCTCG
GTTTTTTTGGGCCCTCTTCTTTCTTCCTTTTTCCTGCTACACCTTATTTC
TATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_p24.g1 MSMg01no462_p24.g1 CHROMAT_FILE:
MSMg01no462_p24.g1 PHD_FILE: MSMg01no462_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:13 2005
         (127 letters)



>mm_chr14_28195521_28196047
          Length = 527

 Score =  246 bits (127), Expect = 5e-70
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtttgcagtgcagaggaaagtactcatggcgggtggtagaagtgacctgtgttgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtttgcagtgcagaggaaagtactcatggcgggtggtagaagtgacctgtgttgtga 260

                                                                       
Query: 61  aaatggaggaggaaaaacagaattagggggtggagagaggagagtgagatgaagaaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatggaggaggaaaaacagaattagggggtggagagaggagagtgagatgaagaaggta 320

                  
Query: 121 aagaaga 127
           |||||||
Sbjct: 321 aagaaga 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)