Query= MSMg01no464_j17.b1 MSMg01no464_j17.b1 CHROMAT_FILE:
MSMg01no464_j17.b1 PHD_FILE: MSMg01no464_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:26 2005
(463 letters)
>mm_chr14_11824042_11824903
Length = 862
Score = 801 bits (414), Expect = 0.0
Identities = 450/463 (97%), Gaps = 5/463 (1%)
Strand = Plus / Plus
Query: 1 cggctcagcttggtcagnttggttagtacagcatccttcccagctgctccttcctctgag 60
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cggctcagcttggtcagtttggttagtacagcatccttcccagctgttccttcctctgag 260
Query: 61 acctctggtggaatccttcctcacatatctttcatctgtctgtctatctgtcttcctgcc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 acctctggtggaatccttcctcacatatctttcatctgtctgtctgtctgtcttcctgcc 320
Query: 121 tgtctgtctgcctgtcagcagcaatgac-agtgttctcaggacttgaggtgatccattca 179
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 321 tgtctgtctgcctgtcagcagcaatgaccagtgttctctggacttgaggtgatccattca 380
Query: 180 acacccccccccatcatgtgacatttttcccacatatggtggatctctgtctttcccccc 239
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaccccccc--atcatgtgacatttttcccacatatggtggatctctgtctttcccccc 438
Query: 240 tgtttact-aacggaggagaagttggagtgctgctggtccattaccatactctcctgggc 298
|||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 439 tgttta-tgaacggaggagaagttggagtgcttctggtccattaccaaactctcctgggc 497
Query: 299 taatgtagcctcttagacagtcatttatgcacaactcttttggaatgtacaacaaactcc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taatgtagcctcttagacagtcatttatgcacaactcttttggaatgtacaacaaactcc 557
Query: 359 taatttccaccattccaaaacttgcgaagatatctgatgcttatagcagagctcccctcc 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 taatttccaccattccaaaacttgtgaagatatctgatgcttatagcagagctcccctcc 617
Query: 419 tttgatgtacgccccctaaacagtgatctcaacaatgtattga 461
||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 618 tttgatgtatgccccctaaacagtgatctcaacaatgtattga 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 862
Length adjustment: 10
Effective length of query: 453
Effective length of database: 852
Effective search space: 385956
Effective search space used: 385956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_j17.g1 MSMg01no464_j17.g1 CHROMAT_FILE:
MSMg01no464_j17.g1 PHD_FILE: MSMg01no464_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:26 2005
(436 letters)
>mm_chr14_11961278_11962113
Length = 836
Score = 750 bits (388), Expect = 0.0
Identities = 424/440 (96%), Gaps = 8/440 (1%)
Strand = Plus / Minus
Query: 1 ctgaactgtagaaactagggatataataaataattattttttttgcaagttaagcatttt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctgaactgtggaaactagggatataataaataattattttttttgcaagttaagcatttt 674
Query: 61 tgagtgctttgttatgtagcaatagacaaataatatatacttctccaattaatactaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgagtgctttgttatgtagcaatagacaaataatatatacttctccaattaatactaact 614
Query: 121 tcaagtttgactaagtcatttttgttagctctgttgtgtttcctgttcacttagtttccc 180
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 613 tcaagtttgactaagtcatttttgttggctctgttgtggttcctgttcacttagtttccc 554
Query: 181 ccacgtttaattttcaaaccttctgaatgtatttcttataaaaatcaaattacaagattt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccacgcttaattttcaaaccttctgaatgtatttcttataaaaatcaaattacaagattt 494
Query: 241 aa----tttttattatctggaaaaactatttgactaggtgtttctgctccagttaggaca 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaagac----tattatctggaaaaactatttgactaggtgtttctgctccagttaggaca 438
Query: 297 gctactgatgtggctaactgttgggaagtgacgtctctcgtgttctctgttcaccaggct 356
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gctactggcgtggctaactgttgggaagtgacgtctctcgtgttctctgttcaccaggct 378
Query: 357 gccctcgcttcttttgccttctcttcccatcttctccagaggattcattaagtttcttta 416
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 377 gctctcgcttcttttgccttctcttcccatcttctccagaggattcattaagcttcttta 318
Query: 417 tattgttttgtccactggtt 436
||||||||||||||||||||
Sbjct: 317 tattgttttgtccactggtt 298
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
