BAC Information

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BAC

Clone NameMSMg01-465J13
Chromosome14 (Build37)
Map Location 89,341,280 - 89,341,679
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465J13.T7 (MSMg01no465_j13.b1)MSMg01-465J13.TJ (MSMg01no465_j13.g1)
ACCAG549739AG549740
length1,213714
length of high quality
(start - end)		---403 (71 - 473)
definitionCHROMAT_FILE: MSMg01no465_j13.b1 PHD_FILE: MSMg01no465_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:45 2005CHROMAT_FILE: MSMg01no465_j13.g1 PHD_FILE: MSMg01no465_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGCGGCGCGTCNCGTGGTAGCGCACGCGGAGCGTTTTTTTTGTTTCGTG
TTACGCCGCCGTAGAGGTGTGGCCACCATTATTTCCTTTCTCGCTCGCGA
CAGCAGATTTACCTATAATATAGACTGAGAGTGAGATTAGGTATGATAGG
TTTGCCGCGTGGCGTGTTACAGCGAGTTACTACGTGTGTTTGTTATGATG
ATGTAGTTATGTGTTCATGATGTCTCAACTTTGTTATTTAGCTCGACGCA
GCCACCGCTCTGTTTATCTCCTCTAGAAAAGCTAAACGCACTCACGCGAG
CCCGACGCCAGCGTGTCAGGTATTGCGATATATGTACCTTTATCATAATA
GTCGGTCTGAAATAGTAAACGAAGAGACACAATATACAGCACCGGGTGTC
ATTAAAGGACCAACACCACCCCAGACTATGCATATATCTACCAGTCATAA
ACTATTATTGCTATCTACAGCATCAATGTGATGCCGAGTGAGTAGATGGC
GATGTTGTAACATAGTTCATATCGTACCGTGACGCCAGCGCATATAAGTA
GACAGGTGAACGACGAATGGTAAGACGGCGCACATAATAACAACACCTCT
ACGTAACCCGCGCACGGCTCCTTGTCTTTAGTTGTGTTTATCGGTCTTCG
CACTCTCGCGAATATTCGATACCCGCCGCATCGTACTATCCAAATCAGAC
TGTCAGAGATGCNCAAAATGCGACGCGTGCCGGAGCATATGTGGCGCTTC
GTACACACTCCAACAATCTAGGCTATAATTAATTCTCTTCATCGAACCGT
CGACTCGCGAGATAAAGCACGACATAGTGCGCGTCTCACGATACGAACTA
CCAGTCAAACACAAGATTAACAACACGAGCTTTATTCACAACATTACACA
TTTATATCGCGCCGGTGTGTCTATATCGTCGTGTAAAACGCATACTCGCA
CTCATGTGATCAAGCGATACCACACACGTACAATATATTGTTCGTGGTCC
ACCGAACAGCAGCGTAAACTGTATACCATTATCCCCTCTATATTCAATAT
ATCACATGTTCATAGGACGAGCGTATGTNCTGTATAATTCAGCGGCCGCC
ATTGTCGACTTATATCAACAACACCGCACACGGTGACGTGTTATGAAGTA
TGTCGATTTCGCGCCAACGTGAATACGATAGATATTAATACTCCTATAAT
ACGCAACGTGCCG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATCTTCAATCCATTGATAATTATCTCAGG
TATTGCTATTCTCATGAACCTAGTATTTAGTTAATTTTAGAGCTGATAGA
TGAAAATAAGAGCTTTATTAATTATAAGAGGAAGCCAGATGGTCTGAACA
TATGGTCCAGAAATCAAAGCTTTTGTACCAAGATAAATTAGAACATCATT
GAGCAATATACTACTTTTGGTATTTGGATATGTTTATTTAATTCATATTT
TCTATACACATTTGATATAACATATCTCAACACCACTCATATTAGTAATA
TTATGATTCTGTGTCATCAGTTTTAAGTGGGTCTTTTCGTTCTAAAATCA
GAATATCTCTTTAGAGTATGTCTGTGCGTGGTGCTGTGGTGTGTGTATTT
GTGAGTGTGGTGTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTNNTTTTTTTTTGGNTTTTTTTTTTTTTNTNNTTTTTNTTTTTTTTT
NTNTTTTTTTNTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTNTTNNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTNNNTNTTTTTTTTTTTTTTTTTTTTTNNTNNNNTTTTTTTTTTT
TTTTTTTNTNTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_j13.g1 MSMg01no465_j13.g1 CHROMAT_FILE:
MSMg01no465_j13.g1 PHD_FILE: MSMg01no465_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:46 2005
         (403 letters)



>mm_chr14_89341135_89341937
          Length = 803

 Score =  774 bits (400), Expect = 0.0
 Identities = 400/400 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcttcaatccattgataattatctcaggtattgctattctcatgaacctagtatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aatcttcaatccattgataattatctcaggtattgctattctcatgaacctagtatttag 486

                                                                       
Query: 61  ttaattttagagctgatagatgaaaataagagctttattaattataagaggaagccagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttaattttagagctgatagatgaaaataagagctttattaattataagaggaagccagat 426

                                                                       
Query: 121 ggtctgaacatatggtccagaaatcaaagcttttgtaccaagataaattagaacatcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggtctgaacatatggtccagaaatcaaagcttttgtaccaagataaattagaacatcatt 366

                                                                       
Query: 181 gagcaatatactacttttggtatttggatatgtttatttaattcatattttctatacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gagcaatatactacttttggtatttggatatgtttatttaattcatattttctatacaca 306

                                                                       
Query: 241 tttgatataacatatctcaacaccactcatattagtaatattatgattctgtgtcatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttgatataacatatctcaacaccactcatattagtaatattatgattctgtgtcatcag 246

                                                                       
Query: 301 ttttaagtgggtcttttcgttctaaaatcagaatatctctttagagtatgtctgtgcgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttttaagtgggtcttttcgttctaaaatcagaatatctctttagagtatgtctgtgcgtg 186

                                                   
Query: 361 gtgctgtggtgtgtgtatttgtgagtgtggtgtgtgtatg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtgctgtggtgtgtgtatttgtgagtgtggtgtgtgtatg 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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