BAC Information

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BAC

Clone NameMSMg01-465K07
Chromosome14 (Build37)
Map Location 104,020,126 - 104,020,349
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel
Downstream geneLOC100043448, Slain1, Ednrb, Pou4f1, 2610206B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465K07.T7 (MSMg01no465_k07.b1)MSMg01-465K07.TJ (MSMg01no465_k07.g1)
ACCAG549775AG549776
length7401,298
length of high quality
(start - end)
224 (79 - 302)---
definitionCHROMAT_FILE: MSMg01no465_k07.b1 PHD_FILE: MSMg01no465_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:49 2005CHROMAT_FILE: MSMg01no465_k07.g1 PHD_FILE: MSMg01no465_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCNGG
AATCATTAATGCAAAACATGATCTATGNCTTACCTACTTTTTCACACCGT
CTCTTCTTGCTCTCTACCTCCAGGTTTCTGGCCATCTTTCTGTTATGGAA
TTACACCAAAGGTTACACTGGATGTGTTGGCTCAGGTACTTTAAGATGGG
GAATCTTTAATCTGCCTTGTCAGTGAGGGCAAGAAACACCCTGATTTTAG
ATTTTTCCCATTTCTCCTTGGGAAAAAAAGTTAATAAACCGTAATTGTCA
AAGAGTATATCATANCTAGATGTTTCTTTTACAGATTTGATTTCACATTG
CAACCACACAGAAGGACAAGTGTTGTTGATAAAATTCCATGGTGTCTTTC
CTTGACCACAAATAATGCTGCTTTTCTGTCTAATGTCTCAGCCATTCAGT
GCCTCACTCTTGCGCGCGCTCGACTGGTCAGGAAGAACGACACTGCAACA
GGATCCTTCTGCACACGTTTATTGGGAGAGTTTGATTGTAGAGGCGGTAC
CCCTACGCCTGTTACTTCTACCAGTTCTAGCTTGCCTTTTTTCCATCAAG
GGCTTATCATCCAGGCCTGGCACGTTTGAAAATGGCTGATCTTTTTTTTT
TTTACCCGCGCTTCCCGGGTTTATAAAACCTGTTTCCTATATTAACTGCG
TGGATCCTCTTTTCCTCCAACATTCGGCCGCTACTTTTTA
ATCTCACTGTTCCCCTCTCCGTGGGATTAGACATACTCATTACATAAACA
GTATATTCCCCGATAGAATCATATATAGTATTACTCATCGAACAAATCAC
AGACCTGACACAGCAAGATAGTTATAGCCAATACGCGAACACCAAATGTA
TACACTATCTACCCTCTCTATCCTCTAACCAGCCGCGCAATCTATGTGTG
TGCCCTACTCCCACGTACCCGTTACTCACTCGTGTATGCTTAGTTATAAA
TTATATGTTAGACGGACCGCTGGTCGGGACGGTACCCATGTGTGTGGCGA
AGCGGAGTGCGCCGCCGCGTTGACATCGCGTCTACGCCACGNCTGCCGTT
GGTCTGTGGCGGATGTCCTCTATACCGATGAAGATCACTAATATTAACCG
TATTTCGCCAGGCCGTAATTACTCTCAACACGATCATGTATATAGTGCCT
GTAATTAAGACATCGTATTCATCACTAGCGCGTTACTCTATTGCGGCGCC
GGCCGTTTATGTTNCACCACGCGCTATATCTCGTGTTGTTTGTGTCCACG
CACTTACATTATCATATCATTCTTCTGAGTCCGCCCGCGCGTTGCGTCTA
TACTTCGCTACACGAGATCGACTCACACATACATATATGTGGTATCGATA
GCCATGCATATGAGACGATTGTCGTGGCGCTTTCAAGATCTATCGCTGCT
TATACGTNGTGTGATGAGCGNGATACGGCGCGCGCGTAGTGAATCGACGG
NGTGCGTGTATCGACGAGGTGACGATTATCCACTTGACGTCATGAGTAGT
ACATAGAAGACACGTCATAGTGCAGATGGTCGCGGTCANTCCAGATCTTC
ATAGATGCAGAGCAGCACGTGCGAGCATANGCATGCGATAGATCCGACTG
CACATACGCTGTAGCTGCATCAGACGGAATGAGTACTGTCGGCAGTTCGA
CGCTCACACGAATAAATTACACGTTAACCATTAGTCAAACACCCATCTTC
GTTATCCTAGCGCTATTCTTCTAAGGTCGGTCCGCACTTCGCGTCNATTA
CGTAGTAGAGCATGGATCACATCTACACACTATGCATAGATANATGAGCA
ANATAATAGTGATGAGGATGTCGTAANACTCACCGCGTGCTGTGACGATC
TGTTGTTAAGCATACGCCTCTCGTGGAACTACATATTGTGCATCAATCGT
TCTCGCGTCGACATATATATGATCAGCGTGCCACTGCCACGCGCGCGCAC
TGCCATCGCACTTTGCTATCCATCNGTTCAGCATCCTATANCTGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_k07.b1 MSMg01no465_k07.b1 CHROMAT_FILE:
MSMg01no465_k07.b1 PHD_FILE: MSMg01no465_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:49 2005
         (224 letters)



>mm_chr14_104019926_104020549
          Length = 624

 Score =  366 bits (189), Expect = e-106
 Identities = 216/225 (96%), Gaps = 2/225 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttacctactttttc-acaccgtctcttcttgctctctacctccaggtttctggccatct 59
           ||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 424 cttacctactttttcaacaccatctcttcttgctcactaactccaggtttctggccatct 365

                                                                       
Query: 60  ttctgttatggaattacaccaaaggttacactggatgtgttggctcaggtactttaagat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttctgttatggaattacaccaaaggttacactggatgtgttggctcaggtactttaagat 305

                                                                       
Query: 120 ggggaatctttaatctgccttgtcagtgagggcaagaaacaccctgattttagatttttc 179
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 304 ggggaatctttaatctgccttgtcagtgagggcaagaaacaccctgaaagtagatttttc 245

                                                        
Query: 180 ccatttctccttgggaaaaaaagttaataaaccgtaattgtcaaa 224
           ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 244 ccatttctccttggg-aaaaaagttaataaaccgtagttgtcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)