BAC Information

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BAC

Clone NameMSMg01-465L03
Chromosome14 (Build37)
Map Location 120,002,718 - 120,002,966
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneAbcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, LOC619601
Downstream geneEG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465L03.T7 (MSMg01no465_l03.b1)MSMg01-465L03.TJ (MSMg01no465_l03.g1)
ACCAG549815AG549816
length722752
length of high quality
(start - end)
249 (59 - 307)407 (69 - 475)
definitionCHROMAT_FILE: MSMg01no465_l03.b1 PHD_FILE: MSMg01no465_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:54 2005CHROMAT_FILE: MSMg01no465_l03.g1 PHD_FILE: MSMg01no465_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCCC
TTTTCTTTCCTGGGAGTGAAGCTGCAGCTCCAGGTCCTATTCTTTTGTAC
TGTTTGTAGAAAGAGGACACAAGAGCCCAGGAGCTAGAATAATGTGAACA
TCCTCAGCCCTCCAGGAACTTGCTTTCCATGGCTCCAGGCTTGGTACTGA
AGCACACATTCTAGGGTAAATGCCTATTGTGACTCGAGAGTTTATTTTAA
ATTGAATCTTTAATATGCAAATGTGAGATCCACCTGGGGCATCATAAGAA
TGAAATCCTTTTTACATCCTGACTTGCACTCTTACATTAGAAGGAAGAAG
AGTAATTTTTTAACCCACCCCTACGATGGTTTTATGCAAATTCTTCAAGC
TAGGCAAATTATTTTTGTGTTAAAATTTTTCAACCCCATAAAAACAGGAG
TGAATTTATGTGGCATTTTAAAACGATGTTGGGCACATTGTAAAGCTATT
TCATCTCATTTATAATGAAGAGTGAACATAATAACAGGCCACAGCATAAT
TAATAGTGAAGTGATTTATGGTACCCCATCCCTCGCCATGCATATTTATG
TATTTTGGGTAGACGGCTGCAAAGTTTCCCTGGCCGGACCCCCTTACCCC
CATTACTCCTTTCAACCTAGATAGGTAATTGTATGTTTCAAACCCTCTTG
ATGGTTATATTTATACCCCTCG
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTATCTCAATATCTATAGGTTATTGATGCTCT
CAGACCTGGTCAGACACCATTTATCACAGAAACTCACAAGTGGACAAAGT
CCAAAGAATGGTTTTGCTATTCTCAGTCCCAAGGTACGGATGTCAATCAT
CCCATTCCTTCAAGGCTCAGGGGCCATGGTAGAAGAAGAATGGAATGAGT
ATAAGAAGCTGAGGTGGAGAGAACCAGAGGGAAACAGTATCTTCTGTGCA
TGACAGTATAGTTGCAGTCATGAACGCACAGCACCTGCGTGAGCACGACC
TGTACATGACCAAGCCTGCCAGCACTCTAGCATGGAGGAGGACAGGGATC
AGCATCCTCCCCTCTAAGCTGAAGGGCTGTTGACATTTGATGGCTTCTGG
GGTGGTGAGTTGGTTTTCTTTAAGAGTGTGGACCTTGGTTGTTGACCTTG
CCTTTCATCATCTAGAATGCGTCTGTCTCTTATTGTACTCACTGCGCTAT
TTCCCTTAACCCCTACACCACTTTATTTTTATATCTTGTGTCTGCTCCTT
CTATAATTTTTTTCTCTTACTTCCAGTCCCCTCTTCATCCCTTTATTTGA
TTTTTCTTTTCCATTTTCTTCTTCACTTATTTATTATTATTATTTTCCCA
TTTCATATCACTTTCCTCCATACCTTGCCCTTTATTCTTTCCCCCCTATC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_l03.b1 MSMg01no465_l03.b1 CHROMAT_FILE:
MSMg01no465_l03.b1 PHD_FILE: MSMg01no465_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:54 2005
         (249 letters)



>mm_chr14_120002518_120003166
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgggagtgaagctgcagctccaggtcctattcttttgtactgtttgtagaaagaggac 60
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 449 cctgggagtgaagctgcagctccaggtcctattattttgtactgtttggagaaagaggac 390

                                                                       
Query: 61  acaagagcccaggagctagaataatgtgaacatcctcagccctccaggaacttgctttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acaagagcccaggagctagaataatgtgaacatcctcagccctccaggaacttgctttcc 330

                                                                       
Query: 121 atggctccaggcttggtactgaagcacacattctagggtaaatgcctattgtgactcgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atggctccaggcttggtactgaagcacacattctagggtaaatgcctattgtgactcgag 270

                                                                       
Query: 181 agtttattttaaattgaatctttaatatgcaaatgtgagatccacctggggcatcataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agtttattttaaattgaatctttaatatgcaaatgtgagatccacctggggcatcataag 210

                    
Query: 241 aatgaaatc 249
           |||||||||
Sbjct: 209 aatgaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)