BAC Information

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BAC

Clone NameMSMg01-465P10
Chromosome14 (Build37)
Map Location 33,906,683 - 34,080,930
singlet/doubletdoublet
Overlap geneEG622657, Arhgap22
Upstream geneOxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18
Downstream geneMapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465P10.T7 (MSMg01no465_p10.b1)MSMg01-465P10.TJ (MSMg01no465_p10.g1)
ACCAG550020AG550021
length743739
length of high quality
(start - end)		434 (62 - 495)450 (68 - 517)
definitionCHROMAT_FILE: MSMg01no465_p10.b1 PHD_FILE: MSMg01no465_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:16 2005CHROMAT_FILE: MSMg01no465_p10.g1 PHD_FILE: MSMg01no465_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,906,683 - 33,907,116)(34,080,481 - 34,080,930)
sequence
ATATTTTCCTGTCGCTAAACGACTCACTTTCCGGAGAGGATCCGCGGAAT
TCTAGATTTCTGTGCAAGACTTAAAATGAGCTTCAGAATACTGCTGTTTC
CCTTTACTTGGGGATAGCTTCAGTGTGTACTCTTGGGGGAGACAATCTTT
GAAATGATAAGGTCAAAACTATTTTTCAGTGAGAAGCAGCTTGACCCTTG
AAGCATCAGAAAAACTCTAAAGGACACGCTAGCAATGTTTAACAGAGATT
TCCATTGAAGACTGATAACAGGCATCTTTCATCTCAGCACTCAGGAGGCA
TAGGCAGTAAATTTCTGTGACTTCATGGCCAGCCTGGTCTATACAGGGAG
TTCCCAGACCAATCAGGGATACATAGCAAGACCCTGGCTCAAAAAATAAG
AAGGTGTGGGTAGAATTTTCACCACGAAATCCATGTGAGAAGGTCTGGCC
AACTATCATCTTCGATCCCCTGTCCATCCACTCATTCTCTGGCTGTTTGT
TGTGATCAATTCAAGGAACACACACCTCACAGCAGAAGCTTGGAGACGAG
TGGGTCCATTTCTCTCTCTTTCATTCTGGCCCCATCACCCATTAAGTCCC
TGATCTTGCTGACCCTTTCAGTTCTGTCCTCTGAGCAGAAAAAATAGCAA
AGTCCCCTTTTTGAGGCTTGGGCCAACAAATAGGGGTTAACAAAGTTCGC
CCCCAAAAAACATTCTGTGACGGGTAAAAGGTTTTATTTCTGG

ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGGTGTGGTTGGGTTGGCTTGGTCTCCACTG
TCCTTTTGAATTCTTTGTCTTTCCAAGTGATCTGCAAGAGGCACTATAAA
CCTTCCATACTTCTACAGAAGATGGCATAGACTATGCAAAATGATATTAT
TAATTCTCTTCTTCTGGATGTTTAATCGACTGGGATGCCCAGCTAGGGTT
TTGCTACCAGTAGGAGATGTCTAATGTGCAAATAACTCCACTTTCACACC
TAACTCTTTTCTCTTAACAGGGAGAACACTGGGTCCTGCAGTGGAGCACT
GAAGCCATGGAATGTCTTACGGCTGCATTCATGGCTCTATCTTTTATATT
TTGTCATAGCAGAACCTGATGCTTTCTTGTTCCACCAGACATACACCTTC
TCTTCCTACTCTAGCACGGGCAGGGTAGTTCACAGCAGGAACTCAACAGT
CTCAGGAACTAATTGGCATAGATGGACTCCCCTGAGTACACTGGATGAGG
TCTACAGATGCCAGATGGACTTCCTGGACACAGGGCCATGGATGCTAAGC
CTGGGAACATGGTCAATATGTGGTTGTGCGGCTGACATGCCTGTCCCTTG
GCACGCACCGCCCGTTGTATATGTCCTCATTATTAAAAGAAAAACTTTTT
TCCCGCGATGTTTACTCTCGGCGTCTTCCGTCCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_p10.b1 MSMg01no465_p10.b1 CHROMAT_FILE:
MSMg01no465_p10.b1 PHD_FILE: MSMg01no465_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:16 2005
         (434 letters)



>mm_chr14_33906483_33907316
          Length = 834

 Score =  824 bits (426), Expect = 0.0
 Identities = 432/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcaagacttaaaatgagcttcagaatactgctgtttccctttacttggggatagcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgcaagacttaaaatgagcttcagaatactgctgtttccctttacttggggatagcttc 260

                                                                       
Query: 61  agtgtgtactcttgggggagacaatctttgaaatgataaggtcaaaactatttttcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtgtactcttgggggagacaatctttgaaatgataaggtcaaaactatttttcagtg 320

                                                                       
Query: 121 agaagcagcttgacccttgaagcatcagaaaaactctaaaggacacgctagcaatgttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagcagcttgacccttgaagcatcagaaaaactctaaaggacacgctagcaatgttta 380

                                                                       
Query: 181 acagagatttccattgaagactgataacaggcatctttcatctcagcactcaggaggcat 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagatttacattgaagactgataacaggcatctttcatctcagcactcaggaggcat 440

                                                                       
Query: 241 aggcagtaaatttctgtgacttcatggccagcctggtctatacagggagttcccagacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcagtaaatttctgtgacttcatggccagcctggtctatacagggagttcccagacca 500

                                                                       
Query: 301 atcagggatacatagcaagaccctggctcaaaaaataagaaggtgtgggtagaattttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagggatacatagcaagaccctggctcaaaaaataagaaggtgtgggtagaattttca 560

                                                                       
Query: 361 ccacgaaatccatgtgagaaggtctggccaactatcatcttcgatcccctgtccatccac 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 ccacgaaatccatgtgagaaggtctggccaactatcatcttcgaccccctgtccatccac 620

                         
Query: 421 tcattctctggctg 434
           ||||||||||||||
Sbjct: 621 tcattctctggctg 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no465_p10.g1 MSMg01no465_p10.g1 CHROMAT_FILE:
MSMg01no465_p10.g1 PHD_FILE: MSMg01no465_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:16 2005
         (450 letters)



>mm_chr14_34080281_34081130
          Length = 850

 Score =  832 bits (430), Expect = 0.0
 Identities = 445/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtgtggttgggttggcttggtctccactgtccttttgaattctttgtctttccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tctggtgtggttgggttggcttggtctccactgtccttttgaattctttgtctttccaag 591

                                                                       
Query: 61  tgatctgcaagaggcactataaaccttccatacttctacagaagatggcatagactatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgatctgcaagaggcactataaaccttccatacttctacagaagatggcatagactatgc 531

                                                                       
Query: 121 aaaatgatattattaattctcttcttctggatgtttaatcgactgggatgcccagctagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaaatgatattattaattctcttcttctggatgtttaatcgactgggatgcccagctagg 471

                                                                       
Query: 181 gttttgctaccagtaggagatgtctaatgtgcaaataactccactttcacacctaactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 470 gttttgctaccagtaggagatgtctaatgtgcaaataactccactttcacacctaactca 411

                                                                       
Query: 241 tttctcttaacagggagaacactgggtcctgcagtggagcactgaagccatggaatgtct 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcactcttaacagggagaacactgggtcctgcagtggagcactgaagccatggaatgtct 351

                                                                       
Query: 301 tacggctgcattcatggctctatcttttatattttgtcatagcagaacctgatgctttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tacggctgcattcatggctctatcttttatattttgtcatagcagaacctgatgctttct 291

                                                                       
Query: 361 tgttccaccagacatacaccttctcttcctactctagcacgggcagggtagttcacagca 420
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 290 tgttccaccagacatacaccttctcttcctactctagcatgggcagggcagttcacagca 231

                                         
Query: 421 ggaactcaacagtctcaggaactaattggc 450
           ||||||||||||||||||||||||||||||
Sbjct: 230 ggaactcaacagtctcaggaactaattggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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