BAC Information

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BAC

Clone NameMSMg01-466C01
Chromosome14 (Build37)
Map Location 68,592,866 - 68,593,055
singlet/doubletsinglet
Overlap genenone
Upstream geneBnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466C01.T7 (MSMg01no466_c01.b1)MSMg01-466C01.TJ (MSMg01no466_c01.g1)
ACCAG550146AG550147
length755751
length of high quality
(start - end)
191 (323 - 513)450 (143 - 592)
definitionCHROMAT_FILE: MSMg01no466_c01.b1 PHD_FILE: MSMg01no466_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005CHROMAT_FILE: MSMg01no466_c01.g1 PHD_FILE: MSMg01no466_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGATCCG
CGGAATTCTCATTTCCCCGACTAGCCCCATGAATCTTTTTCTAGATGATT
GAAACAGCAAGCTATGTAACCCTCCTCCAGCTCCTGCCCACCCCCAGCCA
CTCCCTCCTTTGACTTTCTCCCTGGCTATTGGGAAATGCTGGTTGCTATT
ATACCCGAGGTCCCAGCTGCATGGGCTAGGGGTATTCTCTCTCCTTTTCT
ATATTAGAAAAACGTGTGACATGGGAGATCATGCTTACACGCCTCCTAAT
TTACGAGCCTATTTCTTTTATCAAACGGATATGAATTCTCTACATTGTAT
CTGACATGTGCTACCACAACCTTGGTTACTTTATAGATAGAAAGCAAAGC
CAAGCAAACTTCTTAGTAATAGAAGGAAGATGTTAGAATCCTTTTGCTGA
GTCTTTTAATTAATGGTTACTGCCATCTGTCTGTCAGTTTCCTTCTTAGA
GTGGAACTTACAAAAGGGCAACCTTGAGTGAGCGAATGGCACCTAAGCTC
TAGGTGGCATTTAACTGACATGGAGAGTTTTTGATCTCTCTTTTCTCTAT
TTATATTACACAATAGATAAGGGATCCCAGCATAAACTTCTTAATGATCT
AACCTTTATGTATTAGCATATCATATTTTTTTTCTTCTAATTTAAACCCC
CGCTTTGTTATGCTCGATTCAGCCCTTACTTAATTCCTTCAACCTTTTTT
TGTTA
ATCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAACAGACTGAGATAAACTGAG
CTGCACAGAAGACTCTGTTACCAGAGAGCTGCCTGGAAGAAATAGAGACC
AGCCAAGCTACCTGGAAGGGGCTCAGACCAACTAAGGCACCCGGAGAGGA
CACTCTATAACCTATTAAGCTGCCTATAGGCTGTACAGAGTTCTCTGGGT
TTCCAGATTTTGTGAGTTGTCACCCATTCTGAGATGGGCTTTGATGATAA
TCTGTCTTTGTGTCATGCCTGCTCCTGTAGACAACCCCTTCACCCATATT
CCTGTAAGTAACCCCAATACAACTCATTGGTTCACCAAAGTGAACTTTGG
TGGTATCCATATTTTGGCCTATCATAGGTTCTCCATCAGGGGTGAACACA
GTGTTTGCTGCATCTCCCCAAGAAAAAAAATTTCTTCATACAACAACCAA
TTCATACATTTTATCTTGGTGTAAAGTATCAGTGCCTCAGCAGTACCTGG
CACAGAGTACAGCTCTGAAACATATTTGTGTGACGTGAACAGTGACGTAC
ACTAGATGAAGTTAGCCAACTTATAGCTGGAGAATATAAAAGCACACAAC
TCCACGTACGTCACAGCGGTTCCAATGAAGGCCTGAAACTTAAGCTTAAG
CTCTGACCACTATAACGCCCCAGTTTGGACCCTACGATCCTAACAAAAAT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_c01.b1 MSMg01no466_c01.b1 CHROMAT_FILE:
MSMg01no466_c01.b1 PHD_FILE: MSMg01no466_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:30 2005
         (191 letters)



>mm_chr14_68592666_68593255
          Length = 590

 Score =  339 bits (175), Expect = 9e-98
 Identities = 187/191 (97%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacggatatgaattctctacattgtatctgacatgtgctaccacaaccttggttacttt 60
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aaaccgatatgaattctctacattgtatctgacatgtgctaccagaaccttggttacttt 260

                                                                       
Query: 61  atagatagaaagcaaagccaagcaaacttcttagtaatagaaggaagatgttagaatcct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 atagatagaaagcaaagccaagcaaacttcttagaaatagaaggaagatgttagaatcct 320

                                                                       
Query: 121 tttgctgagtcttttaattaatggttactgccatctgtctgtcagtttccttcttagagt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tt-gctgagtcttttaattaatggttactgccatctgtctgtcagtttccttcttagagt 379

                      
Query: 181 ggaacttacaa 191
           |||||||||||
Sbjct: 380 ggaacttacaa 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 590
Length adjustment: 8
Effective length of query: 183
Effective length of database: 582
Effective search space:   106506
Effective search space used:   106506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)