BAC Information

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BAC

Clone NameMSMg01-466G09
Chromosome14 (Build37)
Map Location 76,710,233 - 76,710,639
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
Downstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466G09.T7 (MSMg01no466_g09.b1)MSMg01-466G09.TJ (MSMg01no466_g09.g1)
ACCAG550354AG550355
length760781
length of high quality
(start - end)
189 (127 - 315)407 (78 - 484)
definitionCHROMAT_FILE: MSMg01no466_g09.b1 PHD_FILE: MSMg01no466_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005CHROMAT_FILE: MSMg01no466_g09.g1 PHD_FILE: MSMg01no466_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAAACTTTTATCTTCGTGTCGCTAAACGAGTCACTTTTCGAAGAGGAT
CCGCGGAATTCTATGTTTCACCTTTATTTTTTTAAAGAATTACTTATTTT
ATGTATGAGTACACTGTCACTGTCTTCAGACACAGCAGAAGAGGGCATCA
GATCCCATTACAGATGGTTTTGAGCCACAATGTGGTTGCTGGGAATTGAA
CTCAGGACCTCTGGAAGAGCAGTCAGGGCTCTTAACCACTGAGCCATCTC
TCCAGCACCTATAAATTACATTAAGACTGGAAAAACATGCAAATAACTAA
TGGCAGGAACAACGTTTGTTTACAACTTGGCTACCGTACAGACTCACAAA
ACCACCACTGACCCGGAAGCAGGGAAGAGCGAAGCTTTGGTGAACACTAA
TGTTCTGGTCCAGGAGACACACCACTTACCCAATGCTGTGTCACCAGAAC
CACAAACTGCTTTGAACAGCCAAACTCAGCGCGAGTCCCCCCCGGACTCC
TTGTCATCTCTTCCTAACAAACTGTCTTCCCTCTAGAGGTTCTTGGTCTG
GAGGCAAGACCTCTTATCATACTTTTATTGGACATCTTATATTTTCTTGG
AATGTCTCTTTCTACCTCCTCGCTTTGGTCACCCTTATCTCCAGCGGTCT
TGTTTAAAATAAACCTCCCCGCTCCCCTTGATGTATTTATTTCTCTACGC
CCACTATATTATTTTTACTCCCTCCTCCGTCACATTTACTCTTTCTCCCT
TTCTTGTCAA
AAAACACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCAAGGAGGAGGCCGATGGCG
AGACTCCAAGACAGGCAGCTGTGGTTTGGGGCTGGGTTCCAGGGTGAGCG
GGGACCGGAGTCCAAATGTGAGCTGAGCAGGTGCCCAGTCATATGCCAGG
CTTGGCTCCAGGAGTCGGCAGAGTTTCTGGAGCAGGACATGTGAATGCCA
AAGAGTTCTCCTTAGGCACCCCCACAGCTAGGCTTGGGGACACAAGACTG
GCTCCTCCTACCCATTGTTTGGCAAGGGTCTCACTGTGTGATAGAGCTAA
ACCTGGGTAGGCCCAGCTGGGCCCTCCCAGCAGGTGGGTAAGTTACGTAG
GTGTCCTGAAGTTGAGTGATTACGTCATCACTCCCTTTCCACCTGACCCT
CATTTCCCCCACTTAGGCAGCCATTCTTACAACCTGGGAACAACTGGCGT
CTTTATAAAATGTTAGCAATTCTGCCTTAACTCTCTGAATACCGACACGA
CTTTCTCGATTGTAGATCTGCGCCCTGATTACCCTGGTCCTGCCTCCTAT
TCTGGTGTCTTCACCAAACCCGCTATCTAGTTCTAACCTCCAACTTTATT
TTTTCTTGCCCTCCCCCGTTACCTCTATTTTTTTTTCAGAGATGCTCCCA
ATACCTCATTTCTCTTTTCCCTCTACTCTTTTTCGCGCTTCTCCTTTTTA
TTCCCCTCCTCCTAATTCTCCCTTCTGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_g09.g1 MSMg01no466_g09.g1 CHROMAT_FILE:
MSMg01no466_g09.g1 PHD_FILE: MSMg01no466_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:52 2005
         (407 letters)



>mm_chr14_76710033_76710839
          Length = 807

 Score =  741 bits (383), Expect = 0.0
 Identities = 401/407 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcaaggaggaggccgatggcgagactccaagacaggcagctgtggtttggggctgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcaaggaggaggccgatggcgagactccaagacaggcagctgtggtttggggctgggt 260

                                                                       
Query: 61  tccagggtgagcggggaccggagtccaaatgtgagctgagcaggtgcccagtcatatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagggtgagcggggaccggagtccaaatgtgagctgagcaggtgcccagtcatatgcc 320

                                                                       
Query: 121 aggcttggctccaggagtcggcagagtttctggagcaggacatgtgaatgccaaagagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcttggctccaggagtcggcagagtttctggagcaggacatgtgaatgccaaagagtt 380

                                                                       
Query: 181 ctccttaggcacccccacagctaggcttggggacacaagactggctcctcctacccattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ctccttaggcacccccacagctaggcttggggacacaagactggctcctcctacccagtg 440

                                                                       
Query: 241 tttggcaagggtctcactgtgtgatagagctaaacctgggtaggcccagctgggccctcc 300
              |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agaggcaagggtctcactgtgtgatagagctaaacctgggtaggcccagctgggcactcc 500

                                                                       
Query: 301 cagcaggtgggtaagttacgtaggtgtcctgaagttgagtgattacgtcatcactccctt 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcaggtgggtaagttacataggtgtcctgaagttgagtgattacgtcatcactccctt 560

                                                          
Query: 361 tccacctgaccctcatttcccccacttaggcagccattcttacaacc 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccacctgaccctcatttcccccacttaggcagccattcttacaacc 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)