BAC Information

Click to search

BAC

Clone NameMSMg01-466K19
Chromosome14 (Build37)
Map Location 50,187,016 - 50,187,416
singlet/doubletsinglet
Overlap genenone
Upstream geneOtx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466K19.T7 (MSMg01no466_k19.b1)MSMg01-466K19.TJ (MSMg01no466_k19.g1)
ACCAG550566AG550567
length811758
length of high quality
(start - end)
76 (88 - 163)401 (85 - 485)
definitionCHROMAT_FILE: MSMg01no466_k19.b1 PHD_FILE: MSMg01no466_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:14 2005CHROMAT_FILE: MSMg01no466_k19.g1 PHD_FILE: MSMg01no466_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCCCACTCATAATTTGCGGGCGCAAAAGGAGTGATTATTCAAAAAGGA
GGCGCGNAATTCCTAGTTACCAGACATTTCTCCAGNAGAAGGCTCCCACG
TTCTAGAGTATTTGAGCAGTACAGATTGGACTCTATGGGCTTTAAGATAA
GTGAACAAATAAGTAAATAAACAGTAAAGCATTATATTGGGTTGGTAGGA
AGGTAGTGGCGTCCCCCTTTCGTTTCCTTCTTCTTTCTATTTGTGTTCTT
TTTTTAGTGGTTTATCCCTTCTGACCCAGTTTTTGCTTTTTTGTCCGCGA
ACCGATTTACCCGTTTTTTTTTCACAGGCAATGACTTTCCCTTTTTTCTC
TTCTTTTTTTTTTACCTTGCCTTTTGACTATGTCCGCCTTTTTCACCAAT
TCATACTAAATTTCAATTTTTTATCCCCCCCTTTTTCTTTTATTTGTTTC
TTTTTCCCTCTTCTTTTTCCCTCTCCCTTTTCATTCCCCTTTTCTTTCCC
CCTCTTTTCTTTCCTTTTATTATTTTTTATATTTACCCCCTTTTATCCCT
CTTCTTCTCCACTTCCTCTTTTCTTTGCACTTTTATTTATTCCTCGCCTA
TTTCATATATCTCTATTTTCAGCCATTCTTTTTCCTTTTTCCTTATTTAC
CTTTTACTTCTTTCTTATCTTCTTTCTTTCATATTTCCCCCATACATTAA
TTTTCTCGTCTTCCCCCCTCCTCTTTTTCTCACCTTCCTCTTTTTTCCCT
CCCCCTCTTCTTTTCTCCCCCTCACCCTCCCCCTTTTTTCTTTTCCCCTT
TTTTTTTTTCN
AAAAACACCCGATGATGTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTCCTTAGCTTTGG
GGACACTCACTGACGAGTCTTTCAATCACTGGTTGGCTTTGATGCACTGT
ATGTTCAGGAAATGGTTCTCAAACATGGCAGAAATAGGCAAGTATATTAT
TAAAACAGTACCTGAGGTCCCCAGAATGGCAGGTTGATAGGTCAAGTTCT
TGGCCAGTCCAACTCCATCCTGGAGGCTTGGGCCAGGTCTCTTATCCACT
AACTGAAATGTGAGCTGTGCATTGGAGTGCTGAGAAAGTTTCCTAACACT
GTTTCCCACTGCATGACTTTGCTTAGTCCTCAGGCAGCCTCCCATTCAGA
TGCCTGCATGTTACAGTTTCAACTGTAATCAATGCTGTGTGAAGTAGGCA
CTCACTACATACTCTTCTGCTTGCACTGTTAGGGGCTGTGGGTAGCACAA
GACAAGGCTTGCATGCTGATTCACGATAAATGTTGATGAGAACAAAATTT
GTCAGCTCCCTTAGTTCATAATTTTTTAGCAGCCCATTTCCACTTAACTT
TATCTTTTCTTTAAACCTTCCACGTGTCTTTTCTTTTTTTACTTCGTCGT
CTACTATTTCTTTTTTTTTGCTTTACCCCCCCCCTTTTGCTTTCTCAATT
ACTTTTGTTTTTTTATTATTCACCATTTTGTTCTTCCTTTTCTGTCTGTC
TACTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_k19.g1 MSMg01no466_k19.g1 CHROMAT_FILE:
MSMg01no466_k19.g1 PHD_FILE: MSMg01no466_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:15 2005
         (401 letters)



>mm_chr14_50186816_50187616
          Length = 801

 Score =  775 bits (401), Expect = 0.0
 Identities = 401/401 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttccttagctttggggacactcactgacgagtctttcaatcactggttggctttgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccttccttagctttggggacactcactgacgagtctttcaatcactggttggctttgatg 542

                                                                       
Query: 61  cactgtatgttcaggaaatggttctcaaacatggcagaaataggcaagtatattattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cactgtatgttcaggaaatggttctcaaacatggcagaaataggcaagtatattattaaa 482

                                                                       
Query: 121 acagtacctgaggtccccagaatggcaggttgataggtcaagttcttggccagtccaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acagtacctgaggtccccagaatggcaggttgataggtcaagttcttggccagtccaact 422

                                                                       
Query: 181 ccatcctggaggcttgggccaggtctcttatccactaactgaaatgtgagctgtgcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccatcctggaggcttgggccaggtctcttatccactaactgaaatgtgagctgtgcattg 362

                                                                       
Query: 241 gagtgctgagaaagtttcctaacactgtttcccactgcatgactttgcttagtcctcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagtgctgagaaagtttcctaacactgtttcccactgcatgactttgcttagtcctcagg 302

                                                                       
Query: 301 cagcctcccattcagatgcctgcatgttacagtttcaactgtaatcaatgctgtgtgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagcctcccattcagatgcctgcatgttacagtttcaactgtaatcaatgctgtgtgaag 242

                                                    
Query: 361 taggcactcactacatactcttctgcttgcactgttagggg 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taggcactcactacatactcttctgcttgcactgttagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)