BAC Information

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BAC

Clone NameMSMg01-466O21
Chromosome14 (Build37)
Map Location 12,764,495 - 12,976,359
singlet/doubletdoublet
Overlap genePtprg, LOC100042441
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466O21.T7 (MSMg01no466_o21.b1)MSMg01-466O21.TJ (MSMg01no466_o21.g1)
ACCAG550761AG550762
length789788
length of high quality
(start - end)		239 (79 - 317)401 (81 - 481)
definitionCHROMAT_FILE: MSMg01no466_o21.b1 PHD_FILE: MSMg01no466_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:37 2005CHROMAT_FILE: MSMg01no466_o21.g1 PHD_FILE: MSMg01no466_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,764,495 - 12,764,733)(12,975,959 - 12,976,359)
sequence
TTTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAGGAGGC
GCGGAATTCCTTAAATTCCAATAGAGGCATTTTGCTGCAGCCTGTAAGGT
TTGGTAGAACACAGTTCTTCGCATCCTAATGGCCAGAAAGTAAAGAAAGG
GAAGAGACCCCCTTCTACCATCCAGGGCCACCTATCTACCAGTATTGCCT
TCAGCTTCTGAATCTGTCAAAGAATGAATCCACTCTCTAGACACAGCCCT
GAAGAGTCTCTGGACACACCCCGAAGTGTGTTTTCATTTTGTTTTGCAAT
TTATTGACTTCATGTTACTTTTTTCAGAAGGTCCAGGTAGTTTAGTTAAG
GTGCCCAGCTTGTGTGATGCATTCATGGCCCTTAGATCTATGCCAGGCTA
CCTAATGCCGTGTTATTTGCCCTTATTGACCTGACCTAATTGAACCTGGT
CTACAGAGTTTATTTTTAGTATTCCAAAAGAAGTCCTTGTTTCCATAGGC
CGAATTAGATCCCGATAGTGACTTTTAATTTACTACTATGCAATCCAGAT
AATCGGATTTTGTAACGTTGGTATAATTCGGTCTTCCAGTTCTTGGCTAA
TAATAAACCTTATTGATTTTAGCTTTTTTTCCTTGTTAATATTGATCCCT
CATTTTTTTTTTTCCTCATGTTTATTTTCTATCTTACCTCCCCTCCTCTA
TTTTTTCTGCTTCTTATATCTTCTTCTCCCCCTTTTTTGTCTTTCCTTCC
CGCCCCCCCTTTTTCCTATTTCCTGTCGTTTTGTTCTAG

TATACCGATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCATGCCAGTGTCTCTT
TATCTCTGCATATTTAATTATTTTCCACTTAGAACAAGAAACAGAAGAAG
CGCCTAGATGGTTTCTGCTGATTAATGTGAGCTCAACTCAGGGAGAGACC
CCTGATGGACTTCCACTGAGAAAGAGAAAGGTTCAAACACACCGTAACCT
TGGGTGCCTTTCAATGCAGCCTTCTCTCATTTCATGAAGGCCTCTGCTCC
CTAATGTGACCCAGATAACAATGTCTAGTGGGGGAATTGAAAATATAAAT
GGAAATGAAGTAAAGGAATCCTCATCTAAAGGAATATGAAAAGTATTATT
CTATAACTGATTGAATGGGCCCTGAGGACTTTCTATTGGGAGAGAAAAAA
GTGGTAAGTCATTAAGAGGCGCACTCAGAGCCGAAACATTCTTCATGTGC
ATATACAATTACAGGGCTTCCTTATTCCGGGGGCCTCCTTTGAATAACAA
TAATAGATCGAGGCTTTCAAACCCCATATGTGTCTCTTTGAAGTTTTCTG
TGTATAGCCTCAATGCCCTAATTGCTTTTGTTAACGCTTCCTATCATAAT
CTCAATTAACTTTTTTTTCATTCTTCCTTACTTTCCGTTCGTCTTGTATT
ATTCTTCGTTGTCCTCTATTCCTTCTCCTTCTCCCTCTCTCCCTTTTCCT
CTTTCTTTTTTCCTCCCCTCTCTTCCGTCGCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_o21.b1 MSMg01no466_o21.b1 CHROMAT_FILE:
MSMg01no466_o21.b1 PHD_FILE: MSMg01no466_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:37 2005
         (239 letters)



>mm_chr14_12764295_12764933
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgctgcagcctgtaaggtttggtagaacacagttcttcgcatcctaatggccagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 attttgctgcagcctgtaaggtttggtagaacacagttcttcgcatcataatggccagaa 260

                                                                       
Query: 61  agtaaagaaagggaagagacccccttctaccatccagggccacctatctaccagtattgc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agtaaagaaagggaagagacccccttctaccatccatggccacctatctaccagtattgc 320

                                                                       
Query: 121 cttcagcttctgaatctgtcaaagaatgaatccactctctagacacagccctgaagagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcagcttctgaatctgtcaaagaatgaatccactctctagacacagccctgaagagtc 380

                                                                      
Query: 181 tctggacacaccccgaagtgtgttttcattttgttttgcaatttattgacttcatgtta 239
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggacacacccagaagtgtgttttcattttgttttgcaatttattgacttcatgtta 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no466_o21.g1 MSMg01no466_o21.g1 CHROMAT_FILE:
MSMg01no466_o21.g1 PHD_FILE: MSMg01no466_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:37 2005
         (401 letters)



>mm_chr14_12975759_12976559
          Length = 801

 Score =  768 bits (397), Expect = 0.0
 Identities = 400/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccatgccagtgtctctttatctctgcatatttaattattttccacttagaacaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actccatgccagtgtctctttatctctgcatatttaattattttccacttagaacaagaa 542

                                                                       
Query: 61  acagaagaagcgcctagatggtttctgctgattaatgtgagctcaactcagggagagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acagaagaagcgcctagatggtttctgctgattaatgtgagctcaactcagggagagacc 482

                                                                       
Query: 121 cctgatggacttccactgagaaagagaaaggttcaaacacaccgtaaccttgggtgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctgatggacttccactgagaaagagaaaggttcaaacacaccgtaaccttgggtgcctt 422

                                                                       
Query: 181 tcaatgcagccttctctcatttcatgaaggcctctgctccctaatgtgacccagataaca 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaatgcagccttctctcctttcatgaaggcctctgctccctaatgtgacccagataaca 362

                                                                       
Query: 241 atgtctagtgggggaattgaaaatataaatggaaatgaagtaaaggaatcctcatctaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgtctagtgggggaattgaaaatataaatggaaatgaagtaaaggaatcctcatctaaa 302

                                                                       
Query: 301 ggaatatgaaaagtattattctataactgattgaatgggccctgaggactttctattggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggaatatgaaaagtattattctataactgattgaatgggccctgaggactttctattggg 242

                                                    
Query: 361 agagaaaaaagtggtaagtcattaagaggcgcactcagagc 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agagaaaaaagtggtaagtcattaagaggcgcactcagagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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