BAC Information

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BAC

Clone NameMSMg01-467G15
Chromosome14 (Build37)
Map Location 109,175,412 - 109,175,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467G15.T7 (MSMg01no467_g15.b1)MSMg01-467G15.TJ (MSMg01no467_g15.g1)
ACCAG551129AG551130
length7561,484
length of high quality
(start - end)		568 (65 - 632)---
definitionCHROMAT_FILE: MSMg01no467_g15.b1 PHD_FILE: MSMg01no467_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:16 2005CHROMAT_FILE: MSMg01no467_g15.g1 PHD_FILE: MSMg01no467_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGGAATTCCTA
CATTAAATTACCAACAACAACAAAACAATCTTACTAACCTATATAAACAC
TGGGCTAAAGAATCAAGTAGATTTTTATCAAGAGAAGAAAGACATGCAAA
TATTCATGGTTATAGTATAATTGGGTAGAAATGGAATTTCCCTTTTTTAA
AAGTATCAATGAGAAGTCAATACATTTTAGGTCTCATCTTTATTACATCA
TGATTAAAGATAATACTATGTTTTACAATTTAAATTTTGTTAAGTAACTA
GATTTTATTTTACACAATATTACTTCCTACATTACTTTTGGAAAAATAGA
GAAAATATTTAATAATATCTCATGTTCCATGAGAGAAAAAATTGATAATG
CCAGCCAGTTTATACATATAAATATGTTGTAATTATGAGGATAAATGTAA
TTTTAAAAAATTAAATTATATACTGGGGCATACTTGAAAATATGTATCAT
CTATATGACAGAATCAAGTTCAGTAAATATTCACATTTTATTAGATATTA
TTTGTTTAAAAATTTAAGGTATATTTTGAATATGTTCAAAGAAATATTCA
AATTAATATGTAACAAAGGTTAAATATTTACCAAATTTTATTGCTATCAT
TTTATTTCTCAGCTAGATTATGTGGGTTGAAAAGNACTGATTTTCTACTA
TCCCAATTAATCCTTTACATTACATTCCACCCTGCTGGTATCAAAAAAAT
GGTATN

GCCACGTAGCAGGCGCTACGCTGCACTTTTGNCTGNCGAGCGCCGCAGCT
GCGCCGCTATTCTCCCTCTCGGATCTATATCACGCGTTGGTCGCGCCGTC
TGTATTGTTGTGAGTGCTGTATACTCTTGACGGAGATAGAGTTGCGCGTG
GTCGANGAGTGCTGCTGCGTCGATTGTGTCGCCGCCGGCGGTGTCGCGCG
TGTNATACATGACCTGCCGGTGAGGCCGAGTGTGACTGTATCCGCGACGC
GGGCGACTCTCACGCACACTATCACTTCATTATGTACTCTCTCTGGTATA
CTCGACAGAGCGCGCGACAAGATGACACGTATGTATCCGCTCCAACACCA
TGTGCCGCGGTCGTTTGATGACACGCGCGCGAGCATTATATATTGTATTG
TGTCCTGCATANTGCCCAGTCTGTACACATGACTCGTGTGCTATTCTTCT
CATGTTCGCTCGTCCCGCCCACTTCGCGAGTATCTGTACTAGCTGCATAC
GGCCGGCATATCCTATGTGAGTGTGGTTGTCTGTTCACTACGGAGCTATA
CTGCGCAGTCTCGATCGGTCCATTATTTATGCCGCGCTTATTCCGGCCGC
CGGCCATCTGCTATGGCGCGCGCTACACACGGATCCCCGGCCACGCGCCG
GTTTTATCTGAGTGCTTCACGCGAACGCATCATAGNCGCGGGCCGTTAGA
GNCGCGCTCCGTGTGTGTGTTATATCTGTTGTCGTCACGTGCACGCTTAC
ANCGGTATGTCAATTCGCGCGCGATGGTGAGTAGCAGATTACGTGCGTCT
TCTTCCGCACTTGGCTCGCCTATTCCAGCGTTACTCCGTCAGTACGCATC
CACGTCCGCGGTCTCCAGTATATATAGCGTCTCATATGAGTCAACTTCTC
GTGCGCTGCGTTGTGACGTCTGTCCGGTCTACGCCGTGTCCCTCTGGAGT
CGCCGTATCTTATAATATCAGTTACGCGGCACGCTCGAGTACATTCGCTC
GTCTTATTTGTGCGGCGCGTCACGTGGCACCGCGAGTACGCTATGCAGGC
GCCGTGACTCACGCGCGTTGATTTGNCACAGCATCGCGCATCACCTCACG
CTCTTCGTGGCTGCGCGCTGTTGTGTCGCGCATCGCCTCTGACTATCTTT
CTATCTTNACTACCTCGCGCCTATTATAGCTCTCGCGATTTGACCTCCGC
TCATAGTCCTATCTCCGTCCGCGCGCGTGCCCTACCCGCGTCAACATGTC
GTCACATCAGATAATAACGCCGTGGAGGACGACTCTCAGACCATCTACGG
CGCGTATATATTGTATCATTTCTATGCCGCCCATCCAGACTCTGCACGAC
GTTTCTTATTCTCACTCTTGTGAGACCACGCGAGATTCTACATCCACCGT
AATGTACCAACGTCTCAGCTGTGTGCTCTAGCACGCCTTATTACTCCACC
TACGATGTTCGTCGATTGACCCATGTCCGCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_g15.b1 MSMg01no467_g15.b1 CHROMAT_FILE:
MSMg01no467_g15.b1 PHD_FILE: MSMg01no467_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:16 2005
         (568 letters)



>mm_chr14_109175212_109176179
          Length = 968

 Score = 1083 bits (560), Expect = 0.0
 Identities = 566/568 (99%), Gaps = 1/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacaacaaaacaatcttactaacctatataaacactgggctaaagaatcaagtagattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacaacaaaacaatcttactaacctatataaacactgggctaaagaatcaagtagattt 260

                                                                       
Query: 61  ttatcaagagaagaaagacatgcaaatattcatggttatagtataattgggtagaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatcaagagaagaaagacatgcaaatattcatggttatagtataattgggtagaaatgg 320

                                                                       
Query: 121 aatttcccttttttaaaagtatcaatgagaagtcaatacattttaggtctcatctttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttcccttttttaaaagtatcaatgagaagtcaatacattttaggtctcatctttatt 380

                                                                       
Query: 181 acatcatgattaaagataatactatgttttacaatttaaattttgttaagtaactagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatcatgattaaagataatactatgttttacaatttaaattttgttaagtaactagatt 440

                                                                       
Query: 241 ttattttacacaatattacttcctacattacttttggaaaaatagagaaaatatttaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattttacacaatattacttcctacattacttttggaaaaatagagaaaatatttaata 500

                                                                       
Query: 301 atatctcatgttccatgagagaaaaaattgataatgccagccagtttatacatataaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatctcatgttccatgagagaaaaaattgataatgccagccagtttatacatataaata 560

                                                                       
Query: 361 tgttgtaattatgaggataaatgtaattttaaaaaattaaattatatactggggcatact 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 tgttgtaattatgaggataaatgtaattt-aaaaaattaaattatatactggggcatact 619

                                                                       
Query: 421 tgaaaatatgtatcatctatatgacagaatcaagttcagtaaatattcacattttattag 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtaaatatgtatcatctatatgacagaatcaagttcagtaaatattcacattttattag 679

                                                                       
Query: 481 atattatttgtttaaaaatttaaggtatattttgaatatgttcaaagaaatattcaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atattatttgtttaaaaatttaaggtatattttgaatatgttcaaagaaatattcaaatt 739

                                       
Query: 541 aatatgtaacaaaggttaaatatttacc 568
           ||||||||||||||||||||||||||||
Sbjct: 740 aatatgtaacaaaggttaaatatttacc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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