BAC Information

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BAC

Clone NameMSMg01-467M17
Chromosome14 (Build37)
Map Location 19,737,928 - 19,738,247
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467M17.T7 (MSMg01no467_m17.b1)MSMg01-467M17.TJ (MSMg01no467_m17.g1)
ACCAG551417AG551418
length764803
length of high quality
(start - end)
239 (72 - 310)320 (70 - 389)
definitionCHROMAT_FILE: MSMg01no467_m17.b1 PHD_FILE: MSMg01no467_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:46 2005CHROMAT_FILE: MSMg01no467_m17.g1 PHD_FILE: MSMg01no467_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
AGATGTAGCCCATAAAGAATTAGAGTCTGAACATGAGAGAGAGTAAATAT
GTTTCAGAAAAGCAGTTATCCCCTGTTTGGGACCTTTTAGCAAAAAAGAG
GGAAAATGAAAATAAGCTATTTCAGAACCCTCCTAGAGACAGAAGGAAAA
TGGGAGATGCCCTGCTTCTTCTCTGGCTCCTATGGAGCTATTCTTAGCTC
TAGTTAGGATATCTGGATCCCTTTGAGACATCAAGTTCTATTCCCTCTCT
GTCTATTGTCTTTTGCTTGGTGCACCAAATTGTCCATATGTCTGTCTATT
TATGTTTGCTTTTGCTTTGTTCTTTGAATGATTGCTGTTCTGTGTTTCAT
GTTGAAAAATACACACGCCTAAAACTTTATCTGCTGGCTGTCTATCCTTT
GTATTAGTTTAACTTGTTTACAAATACGCCTTTACTTTGCACAGCATAAT
TTATTACTTTATACTCGCATTGTGGTCTAGCACTCTAGTCATCGTTGTGA
TAAGCTCTGTTGACATTCCGATTGCTTTCTTACCTTTTATATTTTTCTGT
CTCCTCTCTTCTTTTTTCTACACTTTTTTTCTCATATCCGCTTTTTTTTG
TTTCTTCCTTCTATTCTATTCGTATTTGCTCTCTTTGCTCCTCATGTTTT
ATGCTTGTATCTCTCCGTTTCTTTCACCTATTTTTTCTTCCATCTTGTGC
ACTCTTTTCATTAN
TAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTGAATAGAAACTGTGCGAATTTGAGAGC
TAACAATCAGGGGTAGGAAAATATGCAGGTTTTCTGAGATGGCAGTAAAG
GAATGGAAAAGAGGTTCAGAGGTTGCTGTGTGCATAGTTCGAGGAGGGAT
ATGTGTGCACAGTACATACAGGTGAAGGAGTTAGGCTGCCAAATGAATTG
TCACGAGAAGGGTAAAGCTAGCTCTTGTGCCTACCTTCTTCCTGAACTTG
GCAAGAAAGCATTGTTTTTCATAATGAAATATGATTTTGGCTGATAAAGT
ACTGCTGTGTTGAGGAAGTTCAAGTTCTTTTCTTTTAGTTCAAAAGTTTT
TATTAACATTACCCCGCCGCGGCTTTTCGTTCTTTATTTTTCCTCCTTCG
TCTCCTTCCTTCTTCTCTCTTTTTTTATTTCCTTTCAATCTTCTCTTCTT
TCTCTCACTTCCCTTTTTTTTCTCTCCTAATCTCTTTTCCCCCCTCCTCA
CCCTTTTTCTCTCTTTCCCCTCCCCTCCTCTTCTTTTTCCCTCCCCTGAT
CCCTTTTCATATCTCTATCCCGCTCCCCCTCCTCTCTTTCCCCTTTTCGT
CATCCGTCCTCCTTTTCACTCTATTCTTTCCCTCTTTTTTCCCCTCCATC
CCCCCCACTCTCTCCTTGCTTCCCTTTCTTTTCTCTTTTCGCCCCTTTTT
CGCCCACCTTTCTCCCCTCCTTTTTCTCTTTCGTATTCCCTTCCTCTTTC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_m17.g1 MSMg01no467_m17.g1 CHROMAT_FILE:
MSMg01no467_m17.g1 PHD_FILE: MSMg01no467_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:46 2005
         (320 letters)



>mm_chr14_19737728_19738447
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 315/320 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgaatagaaactgtgcgaatttgagagctaacaatcaggggtaggaaaatatgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgaatagaaactgtgcgaatttgagagctaacaatcaggggtaggaaaatatgcagg 260

                                                                       
Query: 61  ttttctgagatggcagtaaaggaatggaaaagaggttcagaggttgctgtgtgcatagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ttttctgagatggcagtaaaggaatggaaaagaggttcagaggttgctgtgtgtatagtt 320

                                                                       
Query: 121 cgaggagggatatgtgtgcacagtacatacaggtgaaggagttaggctgccaaatgaatt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 cgaggagggatatgtgtgcacagtacatacaggtgaaggaattaggctgccaaatgaatt 380

                                                                       
Query: 181 gtcacgagaagggtaaagctagctcttgtgcctaccttcttcctgaacttggcaagaaag 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatgagaagggtaaagctagctcttgtgcctaccttcttcctgaacttggcaagaaag 440

                                                                       
Query: 241 cattgtttttcataatgaaatatgattttggctgataaagtactgctgtgttgaggaagt 300
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catagtctttcataatgaaatatgattttggctgataaagtactgctgtgttgaggaagt 500

                               
Query: 301 tcaagttcttttcttttagt 320
           ||||||||||||||||||||
Sbjct: 501 tcaagttcttttcttttagt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)