BAC Information

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BAC

Clone NameMSMg01-468F05
Chromosome14 (Build37)
Map Location 57,310,117 - 57,310,445
singlet/doubletsinglet
Overlap gene4930548G07Rik
Upstream geneTgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788
Downstream genePspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468F05.T7 (MSMg01no468_f05.b1)MSMg01-468F05.TJ (MSMg01no468_f05.g1)
ACCAG551824AG551825
length821796
length of high quality
(start - end)
357 (42 - 398)443 (77 - 519)
definitionCHROMAT_FILE: MSMg01no468_f05.b1 PHD_FILE: MSMg01no468_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:30 2005CHROMAT_FILE: MSMg01no468_f05.g1 PHD_FILE: MSMg01no468_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCCTGATCTTTTTCAGACTTTTATCATGAATGGGTGTTGGATTTTGTCA
AATGCTTTCTCAGTATCTAATGAGATGATTATGTGGTTTTTGTCTTTGAG
TTTGTCTATGTAGTGGATTACATTGATAGATTTCCATATATTAAACCATC
CCTGCATCCCTGGGATGGAGCCTACTTGATCGTGATGGATGATCATTTTG
ATGTGTTCTTGAATTCAGTTTGCGAAAATTTTATTGATTATTTTTGCATT
GATATTCATAAGGGAAATTTTTCTTTTTTTCTCTACCTGTGTGAGGTCTT
TATGTGGTTTAGTTATCAGAGTAATTGTGGCTTCATAGAATGAATTGTGT
AGAGCACCTTCTGTTCCTATTTTGTGGAATACTTTGAGGAGAGTTGCAAT
TTCGCCCCTCTTTTCACTTCCTATCTTCTTCTTTTCTTACTCCTATCTGT
TTTCTCGTCCCCTTCCGCTTGCCACCTTTATTTCTTCCTGCCTTCTATTT
TTTTTTTTTCTCCTCTTTTCCTGCTCTTTTATCGCTTTACATTTTTCCCA
TTAATCCTTTTTTCTTCCTTCTTCCTCCATACCTATTCCTTTCTTTCTCC
TCTTCTTTTTCTTTTTCCTCCTTCCTTCCTTTCCTCTTNTCTTCCTTTTA
CTTCTAATTTTATTTTTTTACCCTATCTCTAATGTTTGATTTCCATTATT
CTTTCTAATCTTCCCCCGTCTTTCCTCTCCCTTCCTCTTTTCTCTTTTCT
TCCAAGTATTTTTCTTTCCTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGAAAAATATACAAATAGAGA
ATAAAAGAGGGAGAGAGTCAGTCTCTGGTTGATGCAGGGGTGGGCATGCA
CACAGACACACAGTTTTACCAAATTAAAAGGAGATGTTAACTTATTACAG
TTTTACATAGTCTCGTCTAGGCTGGCCATCAACTAGCTATGTATCCAAGT
TCTAGATCTACCCTAGTTCTACCCTAATTTCTAGATCTTCTTTTTGCTCT
AATGTCCTAAGTACTGCTATTATAGGCTTGGCTTTGGTCTACCCCAGGAC
TCTGTACATTCTAGGTAAGGTCTTTTCCAACTGAGCTACATCTCCAGTCC
TAGACTAACATTTTAAGATTTCCCAGGGTTTTCTAAGATTTTGGTAACTC
ATAACTAAATTCATAATCTACTGAAGAGAGAATCCCTGCAGGTCATCTTT
TCTGAACATTTCCTACACAAACCATTCCAAATATGATGTGTTTCATAAAT
TTTTCCCCCTCTGACTTAACCATTGGTCGTTCGTTCCGCCGAAACTTAGG
CCTCCCAGTGGTTCTTTTCTAGTTCTTTTTATTGGCCTCTAATATTCTTG
GCTTTCGTCTGATAAATGCCCTTTTTTTGGCTGCTTTGACTATTGGTGGC
ATTCCGCCTCCATCTTAAATTCATTTTGTGGCTCAATGTGCACTATTTTT
CCTTTTTTGTCCGTGTCACTATTGTGCTAGTACATATATCTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_f05.g1 MSMg01no468_f05.g1 CHROMAT_FILE:
MSMg01no468_f05.g1 PHD_FILE: MSMg01no468_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:30 2005
         (443 letters)



>mm_chr14_57310117_57310960
          Length = 844

 Score =  605 bits (313), Expect = e-177
 Identities = 325/329 (98%), Gaps = 1/329 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgaaaaatatacaaatagagaataaaagagggagag-agtcagtctctggttgatgc 59
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 acttgaaaaatatacaaatagagaataaaagagggagagaagtcagtctctggttgatgc 270

                                                                       
Query: 60  aggggtgggcatgcacacagacacacagttttaccaaattaaaaggagatgttaacttat 119
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 269 aggggtgggcatgcacacagacacacagttttaccaaattaagaggagatgttaacttat 210

                                                                       
Query: 120 tacagttttacatagtctcgtctaggctggccatcaactagctatgtatccaagttctag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tacagttttacatagtctcgtctaggctggccatcaactagctatgtatccaagttctag 150

                                                                       
Query: 180 atctaccctagttctaccctaatttctagatcttctttttgctctaatgtcctaagtact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 atctaccctagttctaccctaatttctagatcttctttttgctctaatgtcctaagtact 90

                                                                       
Query: 240 gctattataggcttggctttggtctaccccaggactctgtacattctaggtaaggtcttt 299
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 89  gctattataggcttggctttggtctaccccaggactgtgtacattctaggtaagctcttt 30

                                        
Query: 300 tccaactgagctacatctccagtcctaga 328
           |||||||||||||||||||||||||||||
Sbjct: 29  tccaactgagctacatctccagtcctaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 844
Length adjustment: 10
Effective length of query: 433
Effective length of database: 834
Effective search space:   361122
Effective search space used:   361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)