BAC Information

Click to search

BAC

Clone NameMSMg01-468G04
Chromosome14 (Build37)
Map Location 111,852,404 - 111,852,514
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468G04.T7 (MSMg01no468_g04.b1)MSMg01-468G04.TJ (MSMg01no468_g04.g1)
ACCAG551870AG551871
length852891
length of high quality
(start - end)
107 (86 - 192)39 (76 - 114)
definitionCHROMAT_FILE: MSMg01no468_g04.b1 PHD_FILE: MSMg01no468_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:35 2005CHROMAT_FILE: MSMg01no468_g04.g1 PHD_FILE: MSMg01no468_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCCGACCCCTCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAGGGTAATTCCCAAGTGAATAAAAAAGATAATTTA
TCAGAGAAATGAAATTACTAGTAAACACATAAATATTACGAAAAGAAAGC
AAGTCTATAAATGCATCAGCATTTTACCATTTCTTGATGATTACGGATAA
AAGGCAAGACACGAGCGTTCCACTACGATTTCTCTTGCTGGTCTATGTAG
CGCAGATGAAGACTATCCTTGCATACCATTGTCCTGCACCAGCGTAAACA
TTCCAGCTAACACCACTGCCTCTGATGCCTGCCGTTCGTGTTCTGAATAC
TGATGGTAAGCCTGCTAATTATCTCATTAACGGGCGATCTTTTACCTATC
CTAACGCCTCACGTAGAAATTTCCTCTTTTCTCAACTCTGCCGTTTATCT
CTCCTCTATAACTCTTCATTCTCCCCCCATCTAATTCTTCGACACTCCCC
CTTATCCTCACACATATAATCCTCCCTTCCCGCCTCCTATATCGTATTAT
TCCATCCCTCTTTCTCCTCTCCTTTATTATCCTCCTCTCCTATTCCCATC
ATCTTCTCCCTTTATCTCTTATTCTAACTCACTCATCTTTTTTATCACTC
TTTTCTTCTTTACGCACTACCTTAATCCACCTTCCTATTCTTCACACACT
CTATTTTATCTCTTATTAACCGCACATTTTCTCCTTCCCCCTCTTATATC
CCTCCACCACCTTCATTCAATATCCACTTCTCATAATTCTTATACTCCCA
ATTTTTTTACTCCCCCCTCCTCCATATCTTCAATACACCCTCCCTCATCT
CN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTGAAATTCTCTGTCAAGAATATGAAAGGTTG
TTGTTGTTGTTGTTGAGTTAATCTGATATAGAAGACGAAAGTAACCGACT
GACCTTTATGCAGACTTATTAACTTTAAAGAAATATATAGGCTAAACCGG
AATATAGACGTAATTGAAAAGAAACACCAGAATTTCATTTTGTAACTTTT
ACTTTCTAATTTTATTTTCCCCTTTATTAAATAATATATCCTTTTCTCAT
ACCACATACGGTGATTACTGTACGCCTTTTTTTTTTTTCTCTTGACTGTT
CCTATCTTCTCTCCGATTCTGGATCCCCTATTGCTACCATATTGTATTAA
AATCTTCCGCCCTCGTTCTCGATCTTCGGCTACCCGTTCTTCGGTTTCTT
CGCGTATCATCCTAACTATGTTATCCTTTTTCGACTTCCGACTCCCCCCT
GATATATTTTGTTTTTCCCCGCTTCCGGATTATATCGTCTACAATATGTT
CTCGTCTTCTTTCTATCTCTCCCTTTCGCTTTTTAAACGTTATCTTCTCG
TTTACCCTAACTTTCGTACTTCCAATACGTTCTCACTATCTCCGATTCAT
CTCCTATTTAACTATCATTTCTCTCACCATCTTAGCTCCCCTATAGAACG
TCTTCTACATCTACCGCTATCTTCTATCACCTTTCTATTTTTACTATTTG
CTTCAATTCCTCTGTTCCTTCACGTTATTAATCTCTTCATTCTCATTTCT
CGATCACCTTATCTCTCTTCCACTTTCTCCCATCCCTAATCTACCTCTCT
CTTCTATTTTCTCCTTTTACTATTTTTGCTAATAATAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_g04.b1 MSMg01no468_g04.b1 CHROMAT_FILE:
MSMg01no468_g04.b1 PHD_FILE: MSMg01no468_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:35 2005
         (107 letters)



>mm_chr14_111852204_111852714
          Length = 511

 Score =  180 bits (93), Expect = 2e-50
 Identities = 105/111 (94%), Gaps = 4/111 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaagataatttatcagagaaatgaaattactagtaaacacataaatattacgaaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aaaaaagataatttatcagagaaatgaaattactagtaaacacataaatattacaaaaag 260

                                                              
Query: 61  aaagcaagt----ctataaatgcatcagcattttaccatttcttgatgatt 107
           |||| ||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtaagtaagtctataaatgcatcagcattttaccatttcttgatgatt 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 511
Length adjustment: 8
Effective length of query: 99
Effective length of database: 503
Effective search space:    49797
Effective search space used:    49797
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)