BAC Information

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BAC

Clone NameMSMg01-468L16
Chromosome14 (Build37)
Map Location 20,833,299 - 20,833,681
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
Downstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468L16.T7 (MSMg01no468_l16.b1)MSMg01-468L16.TJ (MSMg01no468_l16.g1)
ACCAG552133AG552134
length793783
length of high quality
(start - end)
383 (80 - 462)248 (75 - 322)
definitionCHROMAT_FILE: MSMg01no468_l16.b1 PHD_FILE: MSMg01no468_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:03 2005CHROMAT_FILE: MSMg01no468_l16.g1 PHD_FILE: MSMg01no468_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCG
CGGAATTCAACACATCTACCAAATACTTTTTAAAAAAAGTTTAAAGTAAT
CTGAGGTCTAAATCATTGGTGATACACTTGCCTAAGATGAGACACCTGGT
TCAATCTGTGATATCACAGAAAGCAATAAGAGAATGAAAAGATGAGGTAC
AGACCAAGAGAAATAATTTACAAATCATACATATGACAGAGAATCTATAA
CCAGAATGTATTTTAAAATTCTTACAAATGAATAATAACAAATCCAATTT
TTAAATTACATTTTTGATTCTTAATTNGGTCCATATGTATGTCAATGAAA
CATGATCATAATGAACTTCTATTTCCTCTTCAAACACTCCTTAAAGCCTT
TGACTCCACCCAACTTCATGTCTGTTGGGAAAAAAATTTAGAGACTTCAT
CAAAGAAGATACAAAAACAAAGATTAGACTGTGAAAAGATGCTCATGATA
GTTGATCATGGGCACAATGCACAGTAAAACCCCAATGAGACACTATGACA
GACAAGCAGAATGCCACTGATCAAAAAGACAATATCACATGTTGACAAGG
ATGAGTTTAAAATGGGAACCCTCCTTGCATTGACTGTTCTACAAGTAAAA
TGAATCATAATCCAGGTTAACACTTCTCTTGATGTTTAACCACTAAACCC
CCGTAAGCTTCCCGCAAGGGCCCTTTTTTTTACCCTGCCTCTCCCTGTAA
AAATAAAACTTATCTCCTCCATCTATTGTCTGTGTTACTCCCG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTGCTGAGGAGTCTGGAGAGGATG
GCCTCTGGGGCCTGTTGTCCAGCCAGCCTAACCCAGTCCTCCAGTCCTCC
AGCCAGCCTAACCTAGTCCTCCAGCTTCAGGGCAGCGGGGGCCTGTCTCA
AAGAGTGAAGCTGGGGCCTCTTGCGGAGGAACTGAGTTCAGTTCCTAGCA
TCTACATGGAGGTTACAACTGCCTGTTCCAGGGAATCCAGTGCCCTTTCT
GGCTTCCATGGGCTCCTGCACACACATGCTGCACATACACTCACAAAGGC
CCACGCTGACACATAAATAAAAATAAACAAAATAAGTGGAGAATACCTAA
GGAATGGCACTTGAGGCTGACCTCTGACCTCCATGCATGCATATACTGAG
AGAGAGAGAGAGAGAGAGCACTTTGAATAAAGATCAATTCATCTTAGTGT
ATGCTTCAGTGTGTTTTGTGAGGCAGTGAAGTGGAAATAAGAGGAGAGAG
GCCCCTTTCCTTCCCAGGAAGAGTTCAGTTGCTAGGGAAGTGAAATTGGC
CAACAATTTTTTAGAGAAACTTGTGGACTATCGCCAAACCCCTTTTTTCC
CACATGGTGATTGGAGTTGTCACTCTCCTCTTAAGTTCCCCGACTTAATA
TTTTAGGTGTGTGCGTCTTCAGTTTTAATATAGGTCTGGGTGTTGCTCTT
TGAAACAATCTTGGGTGTTCTCTCATGCTACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_l16.b1 MSMg01no468_l16.b1 CHROMAT_FILE:
MSMg01no468_l16.b1 PHD_FILE: MSMg01no468_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:03 2005
         (383 letters)



>mm_chr14_20833097_20833881
          Length = 785

 Score =  629 bits (325), Expect = 0.0
 Identities = 369/385 (95%), Gaps = 6/385 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaaaaaagtttaaagtaatctgaggtctaaatcattggtgatacacttgcctaagatgag 62
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 203 aaaaaaagtttaaagtaatctgaggtctaaatcattggtgaaatacttgcctaagatgag 262

                                                                       
Query: 63  acacctggttcaatctgtgatatcacagaaagcaataagagaatgaaaagatgaggtaca 122
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 acacctggttcaatctgtgatatcacagaaagcaataagagaataaaaagatgaggtaca 322

                                                                       
Query: 123 gaccaagagaaataatttacaaatcatacatatgacagagaatctataaccagaatgtat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 323 gaccaagagaaataatttacaaatcatacatatgacagagaatctataaccagaatgtac 382

                                                                       
Query: 183 tttaaaattcttacaaatgaataataacaaatccaatttttaaattacatttttgattct 242
            | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 383 ataaaaattcttacaaatgaataataaccgatccaatttttaaattacatttttgattct 442

                                                                       
Query: 243 taat--tnggtc-catatgtatgtcaatgaaacatgatcataatgaacttctatttcctc 299
           ||||  |  | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taataat--gccacatatgtatgtcaatgaaacatgatcataatgaacttctatttcctc 500

                                                                       
Query: 300 ttcaaacactccttaaagcctttgactccacccaacttcatgtctgttgggaaaaaaa-t 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 ttcaaacactccttaaagcctttgactccacccaacttcatgtctgttgggaaaaaaaat 560

                                    
Query: 359 ttagagacttcatcaaagaagatac 383
           |||||||||||| ||||||||||||
Sbjct: 561 ttagagacttcaccaaagaagatac 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 785
Length adjustment: 9
Effective length of query: 374
Effective length of database: 776
Effective search space:   290224
Effective search space used:   290224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)