BAC Information

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BAC

Clone NameMSMg01-468L22
Chromosome14 (Build37)
Map Location 75,381,461 - 75,381,690
singlet/doubletsinglet
Overlap geneLOC100043169
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519
Downstream gene5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468L22.T7 (MSMg01no468_l22.b1)MSMg01-468L22.TJ (MSMg01no468_l22.g1)
ACCAG552145AG552146
length850826
length of high quality
(start - end)
222 (73 - 294)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no468_l22.b1 PHD_FILE: MSMg01no468_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:04 2005CHROMAT_FILE: MSMg01no468_l22.g1 PHD_FILE: MSMg01no468_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTATCAAAATTTGCGGCGCTAAACGACTACTATATTTCGTACTCCGCGGA
ATCAGGAAGNCTTGCAAAAAGATTGCTGCATGCTTGAAGCCACCTGGGGA
TACACAGTAAGTTTCAGATCTGCCTGGACTACAGTATTGCCAAATAAATA
AACAAGTAAGCAAATAAATAAATAGTAATTGCCTGATTTTTTTGTTTGTT
TGTTTTGGACTGGGTCTCAGAATCTAATAAGGTCCAATTAAATTAATCGT
CATGTATTATCCCACATATCCACCAGTCTCTGAACTTTTAAAAATGCTAG
AACTATCAATGAAATGCCTTTATTTTTTTTTCATTTATATTAATCTATCT
ACTGGCAATGATTTTTCATACTTTTTCTAACATATTATGTAACCATACTG
TTGAATTTTTATATCTACACCCCACCATAATCTTTTTTATTTATCTCCCC
CTTTAGAATAACCTTTCATTTCTCCATTTGATCCTTTTTTACTTTACTTT
ATATTTTCTTTTTCCTCTTTTCTTTCCTCTTTTCTTTTCCTCTCTTATCC
CATAATCTCCCCTTTTCATTTCTTCAACTCTTTATCTTCCCCTTCATCCC
ATACACTTCTCCTTTACTACCTCACCTCTTTTTATATTTTTTTTTTCCTT
TACTTTTTTTTTTCTTCTTTCTTATTTTTCTTCTCTTTTTATCTTTTTTT
TTACCTTTCTTTTTTTTTTTTTTCTCTTCTTATCTCTTTTATATTATCTT
TCTTTCTTTTTTATACATTTATTTCTTTTTTACCTCCTTCTCTTTTTATT
TCTTCTCATTTTCTCTTTTTTCTTCTCTTTTTTACTTCTCTCTCATCCCN

NTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTACATTTCGGGGTTTGGTTTC
CATCACAGTCTCTCTGTTAATGTTTCCCCCAAATCTAAGAGTCGGGGATG
GTGATGCTCTCCTACAAACCCCGTACTGGGGAGGCTGAGGCAGGAGGAGA
GACAGTTCCAAGCCAGTCTGAGCCACACAGGAAGACCTTGTTTTAAACAA
ACAAAATGAATTATAAGTGTCCTAAATCTAAGAGGTGGAAGAAAACATGG
AAGTGTCTGAGTAGCTTTAAAATACGATTTTTTTTTGAGCCAAAGGACAA
AAGTTACAAGGAAGCTCTCGTAGGCCATCTGATCTAACCATCTTTACTAG
GGATGGAAGCAGTCAGTTGACCCGCCCACTGTTACTATAGATTCTCTAGC
TTATACTCTCCAGGTGTTTCCCTACTCTCCGGATGGGTTTGATTATGGCC
GTGTATCTTGTATATTCACTTCTCCTCTCCCTAGTTTTCTTTATGTACTG
GATTATTTCTTTCGGTTTTTTATTTTCTTTGTTCTTTACAGTTTTTCCCT
TCTTTTTTTTCTTTTTTTCTTTGTTGTCCAATTCTTGTAATAATCTTATA
TCATGCTTTCTATCCAATGATATTTCATATTCGCTCTTCTCTTTTTCTAT
TTTTCTCTTTAGCTCTTCTTTTTACTTCGTCTTTTTTTCTTTATTCTCTC
CTCGCTTTCATTTATGAGCTTTTGCTCATTCGTTTTATTTCTATTTGTAT
TCTTTTTCAATATCTTTTTACATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_l22.b1 MSMg01no468_l22.b1 CHROMAT_FILE:
MSMg01no468_l22.b1 PHD_FILE: MSMg01no468_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:04 2005
         (222 letters)



>mm_chr14_75381159_75381780
          Length = 622

 Score =  387 bits (200), Expect = e-112
 Identities = 219/230 (95%), Gaps = 8/230 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctgcatgcttgaagccacctggggatacacagtaagtttcagatctgcctggactac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 532 ttgctgcatgcttgaagccacctggggatacacagtaagtttcagacctgcctggactac 473

                                                                       
Query: 61  agtattgccaaataaataaacaagtaagc--------aaataaataaatagtaattgcct 112
           |||||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 472 agtattgccaaataaataaacaagtaagcaaataaataaataaataaatagtaattgcct 413

                                                                       
Query: 113 gatttttttgtttgtttgttttggactgggtctcagaatctaataaggtccaattaaatt 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gatttttttgtttgtttgttttggactgggtctcagaatctaataaggtccaattaaatt 353

                                                             
Query: 173 aatcgtcatgtattatcccacatatccaccagtctctgaacttttaaaaa 222
           |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 352 aatcgtcatgtagtaacccacatatccaccagtctctgaacttttaaaaa 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)