BAC Information

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BAC

Clone NameMSMg01-469D19
Chromosome14 (Build37)
Map Location 86,720,974 - 86,721,532
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603, LOC100043301, EG629815, LOC100043306
Downstream geneLOC100043778, LOC100043310, LOC100043311, Diap3, EG665324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469D19.T7 (MSMg01no469_d19.b1)MSMg01-469D19.TJ (MSMg01no469_d19.g1)
ACCAG552520AG552521
length1,001775
length of high quality
(start - end)
---559 (73 - 631)
definitionCHROMAT_FILE: MSMg01no469_d19.b1 PHD_FILE: MSMg01no469_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:45 2005CHROMAT_FILE: MSMg01no469_d19.g1 PHD_FILE: MSMg01no469_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCTTCTCTCGTGCGCCGTTATCGGGAAGCACTTTTACCGGAGGGCGGA
CGATGTATACCTACTTATTCTATCTTAAACGCGTTCGCGCGTTACCGCCG
TTGTCTCGCAGTCGTAAGATGCTAATGAGAAGCTGCTCTGTTGCCAGCGC
GCGCAGCTAGTTATTATGTTAAGGCGTCCGTCTATTATCCCGCGATTCTC
GCGCATCCTACCAATAATAATAACTCCCCGCTGATGTTTTCTCGTGTGTG
CTTTATAACAAAAAATTATTTATAACATCACTTTATACAAATTACCAACA
CCCTTATCCTGCTCCCGTACGTTTTGCCAGGGTCCGTTTCCCGAGTGTGT
CATTGCCCTTCTCTCTATCGCTCGCTGGACATGGCGTCCATCAAGTCAGT
AAAAGGTATTATAGCTAGGAGGGACGAGGGGAAAGGCGGGGATTAAATGC
GAGACAGGTATAATATTATTCAAGCATGCGCGAAGGATTTAGATAGGCGC
GATGGGGGTAGAAGAGCGTTGCGGATTGCATTAAGCGGCGTTTTATCGGC
ACCACTCCGCGTCGGATTTTTCCATGATCAGCCACGGCGAAATACGTGGA
TATATCGAACCGATAACCGAAATATCCACATCTAAAAAGAAGCGCGGCTT
AGTCCGATGCGCCGGCTAATCGGGTATAATAGTATGGCCGACGACATGAT
TTTTGTTCCTTATGCCGCGTCCACGTTTTCTCCACAAACACCGTAATAAC
GATATTCGCGCCCAAACGTCCTTATCAATCGGTAACCATATGCAGAACTT
TACACACGTACACAATCGAACACATATTCTGTCAACTTCGGCATTTTTGC
GCCTGAATTTTAACCGTGCGTGAAATATCACTAACGCCAATCGGCACTAG
TTTACCCAATTCGGGCGTACATTCGCGAGCAACGGAACTATATTTTCTTC
ACCGCCTTATATCCCTCTCACGTACGTAACATCACCGCCCTCTCGGAGGT
T
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACCTCGAGCCTTTGCAACAGCAACAAG
TTCTCTTCATTGCTGGACCACACGTTCAGCAATGGAAATTCAGAAAGATT
CCCAACTCAAAAGCCTCCTACACTTTGTAAACTTTTGAATCATTGGTATA
GTTGAGCTGCAACATTAAAACAGTTTACAAAATTATGCAGTTCGATTTCT
CCTGCGACAAAACTCTAGGGAAAGTGTTTATATTTGTTAATTTAGTATCC
ATGGCCCTCAAGAAATAAAGGCAAAAGGACTCAATTATAGGTAATTGATC
TCAGTTGCCCTGGAACAAGGGTCAGAGTCCGTCTGCTTCCTCCCCTTCAC
TCCTGAATGAGTAAGTGTGCATGAGTTGATAAAATTAGAAGGAATGAAAG
CACCTGCAGTTTTGATGCACTTTCCACACCGAGCAAAGCTTGTTTCAAAC
TTTTCTGTAAATGCATTTATTTTTCTGAATTGTAATTGACAATGTTTATG
TAAAATTTGCCTAAACCTTAATTTCTCTTCTGAATACTTTCCACATCTGG
TCTTTGCCCTTCCTTTTATTATTTTACCTCACAAAGCTTAATTTCCGCAT
AGACCATATTCTCCCCCCCCCAATGCTATTCTGTACGCATCCGACCACCC
TTGTATAAATACCATTCTCCCACTACCATTTTTTGATTGCCCACCCCCGT
AAGCCCCTTATTTATACCTTCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_d19.g1 MSMg01no469_d19.g1 CHROMAT_FILE:
MSMg01no469_d19.g1 PHD_FILE: MSMg01no469_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:45 2005
         (559 letters)



>mm_chr14_86720774_86721732
          Length = 959

 Score = 1073 bits (555), Expect = 0.0
 Identities = 558/559 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacctcgagcctttgcaacagcaacaagttctcttcattgctggaccacacgttcagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tacctcgagcctttgcaacagcaacaagttctcttcattgctggaccacacgttcagcaa 700

                                                                       
Query: 61  tggaaattcagaaagattcccaactcaaaagcctcctacactttgtaaacttttgaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tggaaattcagaaagattcccaactcaaaagcctcctacactttgtaaacttttgaatca 640

                                                                       
Query: 121 ttggtatagttgagctgcaacattaaaacagtttacaaaattatgcagttcgatttctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttggtatagttgagctgcaacattaaaacagtttacaaaattatgcagttcgatttctcc 580

                                                                       
Query: 181 tgcgacaaaactctagggaaagtgtttatatttgttaatttagtatccatggccctcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgcgacaaaactctagggaaagtgtttatatttgttaatttagtatccatggccctcaag 520

                                                                       
Query: 241 aaataaaggcaaaaggactcaattataggtaattgatctcagttgccctggaacaagggt 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aaacaaaggcaaaaggactcaattataggtaattgatctcagttgccctggaacaagggt 460

                                                                       
Query: 301 cagagtccgtctgcttcctccccttcactcctgaatgagtaagtgtgcatgagttgataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cagagtccgtctgcttcctccccttcactcctgaatgagtaagtgtgcatgagttgataa 400

                                                                       
Query: 361 aattagaaggaatgaaagcacctgcagttttgatgcactttccacaccgagcaaagcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aattagaaggaatgaaagcacctgcagttttgatgcactttccacaccgagcaaagcttg 340

                                                                       
Query: 421 tttcaaacttttctgtaaatgcatttatttttctgaattgtaattgacaatgtttatgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttcaaacttttctgtaaatgcatttatttttctgaattgtaattgacaatgtttatgta 280

                                                                       
Query: 481 aaatttgcctaaaccttaatttctcttctgaatactttccacatctggtctttgcccttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaatttgcctaaaccttaatttctcttctgaatactttccacatctggtctttgcccttc 220

                              
Query: 541 cttttattattttacctca 559
           |||||||||||||||||||
Sbjct: 219 cttttattattttacctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)