Query= MSMg01no469_i19.b1 MSMg01no469_i19.b1 CHROMAT_FILE:
MSMg01no469_i19.b1 PHD_FILE: MSMg01no469_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:10 2005
(483 letters)
>mm_chr14_112300686_112301569
Length = 884
Score = 750 bits (388), Expect = 0.0
Identities = 427/444 (96%), Gaps = 10/444 (2%)
Strand = Plus / Minus
Query: 1 aagtcatgatatatggctcttaaactc-ttttttctttctcctgtttcactgttttaact 59
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 437 aagtcatgatatatggctcttaaactctttttttctgtctcctgtttcactgttttaact 378
Query: 60 gttccttgattatatatatatatctttttgtgtgacaacatatcccatactatgccaaac 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gttccttgattatatatgtatatctttttgtgtgacaacatatcccatactatgccaaac 318
Query: 120 agactatgtctcttattttaaggcatcctcttaaaataaaggtaaaagttcccaagtcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agactatgtctcttattttaaggcatcctcttaaaataaaggtaaaagttcccaagtcag 258
Query: 180 agacttaaagcttaaaataagtctctgacctgggaactttgatccttttgtttgtctttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agacttaaagcttaaaataagtctctgacctgggaactttgatccttttgtttgtctttt 198
Query: 240 tgttttgttttgttttt-ttttgtttggttgtttatgtttttacttctcttttgttttga 298
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 197 tgttttgttttgttttggttttg-------gtttatgtttttacttctcttttgttttga 145
Query: 299 ttgaatcatttttttt-cacaatccaggttttattcctttttcggtcaaccctctgcctg 357
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttgaatcatttttttttcacaatccaggttttattcctttttcggtcaaccctctgcctg 85
Query: 358 ttccacatcccataacttctcctgccatctctatgcagatgtccccatccctccaaccac 417
||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 84 ttccacatcccataactcctcctgtcatctctatgcagctgtccccatccctccaaccac 25
Query: 418 caccccacaaaatgtccacactcc 441
|||||||| |||||||||||||||
Sbjct: 24 caccccaccaaatgtccacactcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space: 413402
Effective search space used: 413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_i19.g1 MSMg01no469_i19.g1 CHROMAT_FILE:
MSMg01no469_i19.g1 PHD_FILE: MSMg01no469_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:10 2005
(528 letters)
>mm_chr14_112100697_112101624
Length = 928
Score = 915 bits (473), Expect = 0.0
Identities = 515/529 (97%), Gaps = 2/529 (0%)
Strand = Plus / Plus
Query: 1 acccggcttcaatttg-ttcctttcttaagaagaggctgatgcaaagctgttacgtttct 59
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccggcttcaact-gcttcctttcttaagaagaggctgatgcaaagctgttacgtttct 259
Query: 60 tcatgattgctagttaccttttccagttgccccacaatggctgggatgtttcttactctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcatgattgctagttaccttttccagttgccccacaatggctgggatgtttcttactctg 319
Query: 120 ttgtaaaattagtgtgttacaaatgaaagccttgatttgcaaagcagctgttggaagtga 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgtacaattagtgtgttacaaatgaaagccttgatttgcaaagcagctgttggaagtga 379
Query: 180 aggggtacccacaagaaactcttagttcttgaagaagaatcggcttacttcaagactgtg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 380 aggggtacccacaagaaactcttagttcttgaagaagaatcggcttacttcaaaactgtg 439
Query: 240 ctccattcatacagcccattttctctctttactggagtagagtcacacaggaaagccttc 299
||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 ctccagccagacagcccattttctctctttactggagtagagtcacacaagaaagccttc 499
Query: 300 ctttcttatagcatgcatacaagtgcctcttaccccaggaaaacaagcaaagtaaaaaac 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttcttataacatgcatacaagtgcctcttaccccaggaaaacaagcaaagtaaaaaac 559
Query: 360 tggaagttcactcttccactttctttagagcctcaaatgaagaagcaaagaaattaatca 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggaagttcactctcccactttctttagagcctcaaatgaagaagcaaagaaattaatca 619
Query: 420 ataccattatcataatctttaaatttcaagttctttagccagaaactaaaatttgaaaca 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 ataccattatcataatctttacatttcaagttctttagccagaaactaaaatttgaagca 679
Query: 480 aaatgttttcatggttaaaaccattatattctaaaataattatttctct 528
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 aaatgttttcatgcttaaaaccattatattctaaaataattatttctct 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
