BAC Information

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BAC

Clone NameMSMg01-469O08
Chromosome14 (Build37)
Map Location 51,708,217 - 51,708,447
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441
Downstream geneRnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469O08.T7 (MSMg01no469_o08.b1)MSMg01-469O08.TJ (MSMg01no469_o08.g1)
ACCAG553024AG553025
length760733
length of high quality
(start - end)
404 (51 - 454)234 (80 - 313)
definitionCHROMAT_FILE: MSMg01no469_o08.b1 PHD_FILE: MSMg01no469_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:37 2005CHROMAT_FILE: MSMg01no469_o08.g1 PHD_FILE: MSMg01no469_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCTCAAAAATTGCGGCCGCTATANGAATCACTTTTCGAAGAGAATC
CGCGGAATTCCTTTGTCCCAAAGTAAGTTTAACAGCGTTTTTTTAAAACA
CTAATAGTGTCTCTTACACCCACTCCCACCCACATGCCCTTCCTCACTCT
CTGTGTCCTTCTTCATCCTGGATTTATTTTTAATCTCACAGAGGACTGGG
AAAACACAGCTGAGCAGGGCTCTCATTATTTCCCTCACACAGCAAACTGG
CTCTCAGGGCCTTTGTCAAGGTCTTGTAGTGACTTGGCCATGTCAGTGTC
CTCTCTATGACTTCATCTTGTCTTCTGCAAGCCAGTGTGCTACCATTCAG
CTAACCCTCTATGCTCTGCTGTCTTCCTAGACACACTGAAGGCAGACAAT
CTCTTAAGGTTCCTCTCTAAATGTTGGGTTTTGGGTTTTTTTTTTATTTT
TTGCCTTGGTTTTGCCTTCCTAATACCCCCCAATATTCCTCTTTATCCTC
TTCTATCTCTCTCTCCTCCCCCCTTTCTTTTCTCTCCTTTTACCTCTTCT
TTTTTCTCCTTCACTTTTTCCTTTCCCTTAACCTTTTTTTTTCCCTCTAT
TCTAGTTCTCTACTTACCCCCCCTTTTTTTCTTTCCCTTCCCCTTCTTCT
TCCTTTACACCCTTTTTTCTCTTCCCCCTCTCCATCTCCTACATTCTTCT
CCCCACCTTCCCTTCACCTCCCCCTTTATTCTCTTCCATTTCATCCGCCT
CATTCTCTTC
NNTTCCGATGATAGTGGGAGGCCTGGNGGCCGCCTTTTCACATCTTTAGG
NGAACNANAGAATACAAAACACAATCCAAACTGGATAAGAAATGGACTAA
AATATAATTTTAGTTTGCTTGCTTTCTAACTCCCCCAAAAAACCAGCAAC
CGAATCCTTTTCTAAGAAAGAGAGAAACTGTGATCTGTGTGGCCCTATAG
CTCAGGGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAAAT
CTCGCTGGGGCCTGAGTCTACCTAGACTTTTGAGCACAGGATTTTCTGGC
AGTCTGTCGCTAATTNNCTANATCGTCGTTGGCTTTTTGTTCCAGTGCAA
TCCCACACCCCTGCGCGCTCTGCACTCTGAGAAAGGGGGGCAGCCTGCTA
TGCGCACGGAGATCGGACGAAGGGAAAGTTGATCCCTTACAAAAGCTGGG
CAGAAAGAAGTAGGACTGGCCCCCTCGTGCTGTACGGGGAGGCTACTGGC
ACAGGAGCCAGAGGCCTGGGAATCCAGATACTTCTCTGTCTCGCGCAGGA
AATAAAGCACCGTAGTTGTCGTGAGACCTTGTGCACTAAACCATGCAATG
TCCTCTATTTGGCCGCGGCTACGTTTTTCACCATATACAACGCCCTTCTT
TTCTCTACACCTCCTTTACCGTTAACTGCTTGAGCTAACCCCGGTTTCTC
TCCCATTTCCCCCTTTCTTTTTCCCCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_o08.g1 MSMg01no469_o08.g1 CHROMAT_FILE:
MSMg01no469_o08.g1 PHD_FILE: MSMg01no469_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:38 2005
         (234 letters)



>mm_chr14_51708014_51708647
          Length = 634

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggataagaaatggactaaaatataattttagtttgcttgctttctaactcccccaaaaaa 63
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 204 ggataagaaatggactaaaatataattttagtttgcttgttttctaacgcccccaaaaaa 263

                                                                       
Query: 64  ccagcaaccgaatccttttctaagaaagagagaaactgtgatctgtgtggccctatagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccagcaaccgaatccttttctaagaaagagagaaactgtgatctgtgtggccctatagct 323

                                                                       
Query: 124 caggggttagagcactggtcttgtaaaccaggggtcgcgagttcaaatctcgctggggcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caggggttagagcactggtcttgtaaaccaggggtcgcgagttcaaatctcgctggggcc 383

                                                              
Query: 184 tgagtctacctagacttttgagcacaggattttctggcagtctgtcgctaa 234
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgagtctacctagacttttgagcacaggattttctggcagtctgtcgctaa 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)