BAC Information

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BAC

Clone NameMSMg01-469P10
Chromosome14 (Build37)
Map Location 9,871,008 - 9,871,474
singlet/doubletsinglet
Overlap geneLOC100041948
Upstream geneAbhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469P10.T7 (MSMg01no469_p10.b1)MSMg01-469P10.TJ (MSMg01no469_p10.g1)
ACCAG553076AG553077
length752774
length of high quality
(start - end)
528 (76 - 603)470 (82 - 551)
definitionCHROMAT_FILE: MSMg01no469_p10.b1 PHD_FILE: MSMg01no469_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:43 2005CHROMAT_FILE: MSMg01no469_p10.g1 PHD_FILE: MSMg01no469_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCAAAATTTGCGGCCGCTATACGAACCCTTTTCAAATCGATCCGNGG
NAANCACATATCACAAATCGACCATTTTACCAAAGGCAGATTACAATTTA
CAATTGGCAGATTCAATGCAATCCCCATCAAAATCCTAACACAATTCTTC
AAAGACATGGAAAGAGTAATTCTCAATTTAATATGGAAAAACAAAAAAAC
CCAAGATAACGAAAACAATTCTTAACAATAAAAGATCTTCTGGAGGAATC
ATCATCCCTGACCTCAACCTATACTACAGAGCAATAGTAATAAAAACTGC
ATGGTATTAGTACAGATATCATAGTTTGATCAATGGAATAGAATTGAAGA
CTCAGAAATAAAACCACACATTTATGGACACTTGATCTTTGATAAAGAAG
CCAAAAATATACAATGGGGGAAAAAGCATCTTCAATAAATGGTGCTGGTC
TAACTGGCAGTCTGTATGTCGAAAAATGAAAATAGACCCATATTTGTCAC
TTTGCACAAAGCTCAAGTCCAAGTGGATCAAGGAGCTCAACATAAAACCA
GACACCCTGAATTTAATAGAAAAAAAAGTGGGAAAGATCCTTGAACTCAT
TGGGACTGGGCAGGGGCAGGGGTCAGGGGTCAGGGAGCAACTTCTTTCCT
TTTCTTTTTTTTTCAATACATTTTTTAATACGCATTTTTCCTCATTTATA
TTTCCAATGCTATTCCCAAAGTTCCTCTTACCCTCCCCCCCCAATTCCCC
TN
NCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAATCGTACACCCCATAGCT
GATCTCTTATACATCTGTGGAACTTTGGGAAATGCCTAGAGCACCTCCCT
TAATTCTTCAGAACATAATCAGAATTTCACAGGAACTAAGAACGAAAAGG
AAAATAGTTTGATTTGTTCACTCACTGCTAAAATACTGCTGAAAAATCAG
GCAGGCCCGGTTCTGTTTTAGATTTTTGTTTAATTCAACATTAACAAATA
CTGGGAGAATGTGGTAAAAAGAGGAACAGCATCTCTTAGTTGGGACAGAG
CCCTGTGTACATACCGTAGCTTGGTCATGAGTTTAAACTATTATCAGAGC
AACAGACCTAATTCTGTCAGGCGATGTTGGAGATCTTGGGCAATAAGATA
TAGGTCTTCAGTTGGCAAGGGCAGTGCTGGAGATGTCAACTGAGGTAAAA
GAAAGCCCACCAGTCTGCATGATGTCTTGGGAAGTTTCAATGGAGCTTGG
CCTAAACTCAAGAAGAATCGATCCACCATAGTGGTTATTTTCAACTACAT
GGGCTTGTCAGATTCAGGGGAGAAACTGGGGACCCTTGCTGGTTAATGAG
CACCCCCTTATAATCAGGGGGACCATTGGTTAAAAACCCCTTTGGTTTGG
AATTCCTAACAATCCCCTTTTTGTCCGCTGGGAAAAAAAAGCCTCACTAA
GGGTGGGGTTTATTTCAACCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_p10.g1 MSMg01no469_p10.g1 CHROMAT_FILE:
MSMg01no469_p10.g1 PHD_FILE: MSMg01no469_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:43 2005
         (470 letters)



>mm_chr14_9870808_9871674
          Length = 867

 Score =  878 bits (454), Expect = 0.0
 Identities = 465/470 (98%), Gaps = 3/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcgtacaccccatagctgatctcttatacatctgtggaactttgggaaatgcctagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aatcgtacaccccatagctgatctcttatacatctgtggaactttgggaaatgcctagag 608

                                                                       
Query: 61  cacctcccttaattcttcagaacataatcagaatttcacaggaactaagaacgaaaagga 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cacctcccttaatccttcagaacataatcagaatttcacaggaactaagaacgaaaagga 548

                                                                       
Query: 121 aaatagtttgatttgttcactcactgctaaaatactgctgaaaaatcaggcaggcccggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaatagtttgatttgttcactcactgctaaaatactgctgaaaaatcaggcaggcccggt 488

                                                                       
Query: 181 tctgttttagatttttgtttaattcaacattaacaaatactgggagaatgtggtaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tctgttttagatttttgtttaattcaacattaacaaatactgggagaatgtggtaaaaag 428

                                                                       
Query: 241 aggaacagcatctcttagttgggacagagccctgtgtacataccgtagcttggtcatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aggaacagcatctcttagttgggacagagccctgtgtacataccgtagcttggtcatgag 368

                                                                       
Query: 301 tttaaactattatcagagcaacagacctaattctgtcaggcgatgttggagatcttgggc 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 367 tttaaactattatcagagcaacagacctaattctgtcaggcgttgttggagatcttgggc 308

                                                                       
Query: 361 aataagatataggtcttcagttggcaagggcagtgctggagatgtcaactgaggtaaaag 420
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aa---gatataggtcttcagttggcaagggcagtgctggagatgtcaactgaggtaaaag 251

                                                             
Query: 421 aaagcccaccagtctgcatgatgtcttgggaagtttcaatggagcttggc 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaagcccaccagtctgcatgatgtcttgggaagtttcaatggagcttggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 867
Length adjustment: 10
Effective length of query: 460
Effective length of database: 857
Effective search space:   394220
Effective search space used:   394220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)